User: jeremias.br

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jeremias.br10
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Posts by jeremias.br

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Comment: C: Failure to launch OMA in array mode on SLURM cluster
... I'm using slurm 17.02.3 on CentOS 7.3.1611. ...
written 21 months ago by jeremias.br10
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Answer: A: Failure to launch OMA in array mode on SLURM cluster
... Hi Adrian, Thanks for your reply. 1. exporting in the shell used to submit the job did not work. OMA still thinks it is running as a single process. 2. I did two runs one where I included the "export NR_PROCESSES=2" command in the script and one without. with the export command: > Starting ...
written 21 months ago by jeremias.br10
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Comment: C: Why would be de novo gene assembly from RNA-seq data useful?
... As mentioned by Nicolas there are many situations where a good reference is not available. This is especially true in non model organisms. In many cases it might be possible to map to a closely related reference but you will miss novel genes. So de novo assembly is also usefull to detect those novel ...
written 21 months ago by jeremias.br10
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Failure to launch OMA in array mode on SLURM cluster
... I am working on a CentOS 7.3 cluster running Slurm and I am using OMA 2.1.1. Unfortunately I am not able to run OMA in array mode. I am working with the included files in the ToyExample directory. Here is the SLURM script I have run: #!/bin/bash #SBATCH --time=6:00:00 #SBATCH --job-nam ...
orthologs oma slurm written 21 months ago by jeremias.br10

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