User: Bmusungu

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Bmusungu20
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6 years, 9 months ago
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Posts by Bmusungu

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Get SRA information from NCBI
... @ATpoint I think that post covers it. Thanks ...
written 4 months ago by Bmusungu20
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(Closed) Get SRA information from NCBI
... Hello everyone, My questions is there some tool or api that can collect the SRA information for a NGS file by just submitting SRA number. I have multiple that I would like to be able to submit. For example, SRR1186819: **Sample description:** Most organisms can experience various levels of hypox ...
rna-seq written 4 months ago by Bmusungu20
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Comment: C: Remove vector sequences
... @dani357 Did you ever find a solution? ...
written 10 months ago by Bmusungu20
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Comment: C: vcf format to Mapmaker format
... @arnstrm I was able to get work for every type of cross but the outcross that I want to do. Which type of cross are you trying to do in onemap. ...
written 2.1 years ago by Bmusungu20
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Comment: C: vcf format to Mapmaker format
... 10 5 *M1 B3.7 ab,ab,-,ab,b,ab,ab,-,ab,b *M2 D2.18 o,-,a,a,-,o,a,-,o,o *M3 D1.13 o,a,a,o,o,-,a,o,a,o *M4 A.4 ab,b,-,ab,a,b,ab,b,-,a *M5 D2.18 a,a,o,-,o,o,a,o,o,o This is the make up of input file. ...
written 2.1 years ago by Bmusungu20
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Comment: C: vcf format to Mapmaker format
... I'll give that try arnstrm. There is also this perl script that I couldn't get to work earlier https://github.com/johnomics/scripts/blob/master/convert_vcf_to_joinmap.pl ...
written 2.1 years ago by Bmusungu20
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vcf format to Mapmaker format
... Hi everyone, I am trying to convert my vcf file into mapmaker format to run in OneMap in R. Does anyone know of a script that is already available that can do this conversion. Thank you Bryan ...
mapmaker snp written 2.1 years ago by Bmusungu20
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Comment: C: Error While Combining Multiple Csv
... No, because I've been trying to combine microarray soft files together. ...
written 6.8 years ago by Bmusungu20
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(Closed) Error While Combining Multiple Csv
... > files <- list.files(pattern=".csv") > files [1] "GDS2475.csv" "GDS2477.csv" "GSE12594_soft.csv" [4] "GSE15435.csv" "GSE20130.csv" > data() > DF <- NULL > for (f in files) { + dat <- read.csv(f, header=T, sep="\t" ...
R microarray written 6.8 years ago by Bmusungu20 • updated 5 months ago by RamRS20k

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Popular Question 6.8 years ago, created a question with more than 1,000 views. For Error While Combining Multiple Csv

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