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3
votes
4
replies
1.9k
views
Is there any plant-specific genome assembler?
plant
Assembly
pine
birch
updated 6.3 years ago by
Medhat
9.7k • written 6.4 years ago by
bioinformatics_bel
▴ 20
2
votes
2
replies
1.7k
views
What tools are proper for plant genome pre- and post-assembly and annotation of the de novo results?
Assembly
annotation
postprocessing
denovo
plant
updated 6.3 years ago by
colindaven
6.3k • written 6.4 years ago by
bioinformatics_bel
▴ 20
1
vote
0
replies
1.0k
views
How to run BG7 jar as a standalone application? Is there any cookbook and sample cases?
bg7
software
pipe
6.4 years ago by
bioinformatics_bel
▴ 20
0
votes
0
replies
1.0k
views
How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
rast
prokka
bg7
velvet
Assembly
6.4 years ago by
bioinformatics_bel
▴ 20
4
votes
3
replies
1.5k
views
Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
gnu
parallel
snpeff
bedtools
prokka
updated 6.4 years ago by
WouterDeCoster
47k • written 6.4 years ago by
bioinformatics_bel
▴ 20
1
vote
1
reply
2.9k
views
What software is a good standalone alternative to the Prokka genome annotation software?
software
annotation
prokka
updated 6.4 years ago by
h.mon
35k • written 6.4 years ago by
bioinformatics_bel
▴ 20
0
votes
6
replies
1.9k
views
How to fix Prokka`s annotation software error?
prokka
annotation
fasta
software error
updated 6.4 years ago by
Matt Shirley
10k • written 6.4 years ago by
bioinformatics_bel
▴ 20
0
votes
1
reply
1.2k
views
Comment:
C: How many short-reads are enough to do a valid bacterial genome assembly using V
6.4 years ago by
bioinformatics_bel
▴ 20
0
votes
3
replies
1.2k
views
How many short-reads are enough to do a valid bacterial genome assembly using Velvet and to perform a good annotation?
genome assembly
updated 6.4 years ago by
Kevin Blighe
87k • written 6.4 years ago by
bioinformatics_bel
▴ 20
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