User: silvia.shuchang.liu

Reputation:
10
Status:
New User
Location:
Last seen:
6 days, 9 hours ago
Joined:
1 month ago
Email:
s******************@gmail.com

Posts by silvia.shuchang.liu

<prev • 2 results • page 1 of 1 • next >
1
vote
1
answer
472
views
1
answers
Answer: A: How to set genotypes with low GQ to missing. in a vcf file.
... You can use vcftools '--minGQ' option for genotype quality filtering > vcftools --vcf a.vcf --minGQ 90 --out b --recode A b.recode.vcf file will be generated. Please check man vcftool for details, https://vcftools.github.io/man_latest.html ...
written 29 days ago by silvia.shuchang.liu10
0
votes
1
answer
2.3k
views
1
answers
Answer: A: Error running smartpca from eigensoft
... Since example.evec should be an output from smartpca step, and its the input for evec2pca.perl step. But for smartpca.perl, there is no where to set this argument, so the second step cannot find example.evec. I suggest you to use the steps separately, $../POPGEN/example.perl smartpca -p par.exampl ...
written 4 weeks ago by silvia.shuchang.liu10

Latest awards to silvia.shuchang.liu

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 868 users visited in the last hour