User: mb2subi

gravatar for mb2subi
mb2subi0
Reputation:
0
Status:
New User
Last seen:
4 days, 14 hours ago
Joined:
1 year, 5 months ago
Email:
m******@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by mb2subi

<prev • 17 results • page 1 of 2 • next >
0
votes
1
answer
63
views
1
answers
Comment: C: ASEReadCounter More then one variant context at position
... But theoretically with SelectVariants I should have corrected this "error", right? If not, how I can avoid this positions with more than one variant? ...
written 4 days ago by mb2subi0
0
votes
1
answer
63
views
1
answers
Comment: C: ASEReadCounter More then one variant context at position
... Theoretically the vcf is of SNPs only. I align using bwa -mem but I can try with bowtie2 --local I used allelecounter but the follow advice arose: Traceback (most recent call last): File "/imppc/labs/lplab/share/marc/repos/allelecounter/allelecounter.py", line 177, in main() ...
written 4 days ago by mb2subi0
0
votes
1
answer
63
views
1
answers
Comment: C: ASEReadCounter More then one variant context at position
... chr1 1056601 . A G chr1 1056601 . A ACGTGTGGGTGCGTGTG chr1 105660121 . C T ...
written 4 days ago by mb2subi0 • updated 4 days ago by Pierre Lindenbaum118k
1
vote
1
answer
63
views
1
answer
ASEReadCounter More then one variant context at position
... Hi everyone, I am doing an allelic imbalance of ATAC-seq data using a vcf generated with Strelka2. I used the ASEReadCounter of GATK: java -jar $GenomeAnalysisTK \ -R $reference \ -T ASEReadCounter \ -o $out \ -I $bam \ -sites $vcf But this error arosed: ##### ER ...
selectvariants gatk asereadcounter written 7 days ago by mb2subi0 • updated 7 days ago by Charles Warden6.5k
0
votes
0
answers
696
views
0
answers
Comment: C: java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
... How can split properly the fq.gz for doing the resynchronization? ...
written 6 weeks ago by mb2subi0
0
votes
0
answers
696
views
0
answers
Comment: C: java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
... Thanks. By the way, isn't possible to do something with the heap space? ...
written 10 weeks ago by mb2subi0
0
votes
0
answers
696
views
0
answers
Comment: C: java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
... The point is that won't be easy to ask them, for this reason first I'm trying to resolve by myself, if it's not possible the last option will be to ask them. ...
written 10 weeks ago by mb2subi0
0
votes
0
answers
696
views
0
answers
Comment: C: java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
... The facility sent it out of sync ...
written 10 weeks ago by mb2subi0
1
vote
0
answers
696
views
0
answers
java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
... Hi, I am trying to re-synchronize a set of fq paired-end reads using repair.sh but the following error arises: Set INTERLEAVED to false Started output stream. Exception in thread "main" java.lang.OutOfMemoryError: Java heap space at java.util.regex.Pattern.compile(Pattern.java ...
outofmemoryerror xmx paired-end bbmap repair.sh written 10 weeks ago by mb2subi0
0
votes
2
answers
183
views
2
answers
Answer: A: Error with demuxbyname.sh
... Thanks to everyone, it finally works Set INTERLEAVED to false Input is being processed as paired Time: 78.217 seconds. Reads Processed: 11907482 152.24k reads/sec Bases Processed: 893061150 11.42m bases/sec Reads Out: 18230680 Bases Out: 13673 ...
written 11 weeks ago by mb2subi0

Latest awards to mb2subi

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 903 users visited in the last hour