User: shiy05

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shiy050
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Posts by shiy05

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Answer: A: bcftools to remove non-variants sites
... I find out my answer: ``` bcftools view -c 1 -c 1:nonmajor test.vcf ``` ...
written 26 days ago by shiy050
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bcftools to remove non-variants sites
... Dear all, I am used to using vcftools to remove non-variants sites. The command I used: ``` vcftools --vcf input.vcf --mac 1 --recode --out input.mac ``` However, I cannot find the same command in bcftools. I tried ``` bcftools view -m2 -M2 -v snps input.vcf ``` and ``` bcftools view --min- ...
vcf filter bctools vcftools snp written 26 days ago by shiy050

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Scholar 26 days ago, created an answer that has been accepted. For A: bcftools to remove non-variants sites

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