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Posts by shiy05
... I find out my answer: ``` bcftools view -c 1 -c 1:nonmajor test.vcf ``` ...
... Dear all, I am used to using vcftools to remove non-variants sites. The command I used: ``` vcftools --vcf input.vcf --mac 1 --recode --out input.mac ``` However, I cannot find the same command in bcftools. I tried ``` bcftools view -m2 -M2 -v snps input.vcf ``` and ``` bcftools view --min- ...
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