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2
votes
4
replies
1.7k
views
Can we call a protein under undergone ChIP as ChIP'd protein? Is it formal?
ChIP-Seq ngs
updated 17 months ago by 43k • written 8.8 years ago by 11k
2
votes
5
replies
6.0k
views
Adapter Dimer Contamination Irregularities Between Multiplexed Samples [Chip-Seq/Rna-Seq]
chip-seq rna-seq illumina hiseq
updated 5.4 years ago by • 0 • written 11.8 years ago by 11k
1
vote
6
replies
6.3k
views
Peak Calling Biasing!!! [Macs14]
chip-seq macs
updated 6.8 years ago by 20 • written 11.9 years ago by 11k
5
votes
4
replies
2.3k
views
Any comparisons of read length for variant calling?
SNP Assembly next-gen variant gatk
updated 7.0 years ago by 20k • written 7.0 years ago by 11k
3
votes
6
replies
2.7k
views
What is the correct way to cite a technology like ABI Solid Sequencing?
ChIP-Seq RNA-Seq Assembly sequencing next-gen
8.0 years ago by Sukhi Singh 11k
2
votes
3
replies
1.4k
views
Should missing values in one condition but highly significant in other stay or go away? [NGS]
ChIP-Seq RNA-Seq R next-gen statistics
8.1 years ago by Sukhi Singh 11k
17
votes
2
replies
5.5k
views
Machine Learning And Chip-Seq
chipseq rnaseq transcription-factor
8.2 years ago by Sukhi Singh 11k
7
votes
9
replies
5.0k
views
How to know if samtools sort exited normally [left temporary files behind]
ngs ChIP-Seq next-gen samtools
updated 19 months ago by 43k • written 8.5 years ago by 11k
19
votes
12
replies
11k
views
Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
ngs chipseq coverage
updated 8.7 years ago by ★ 3.4k • written 11.1 years ago by 11k
11
votes
8
replies
3.3k
views
Correlating ChIP-Seq peaks with isoform level expression
RNA-Seq sequencing cufflinks ensembl ChIP-Seq
updated 15 months ago by 43k • written 8.9 years ago by 11k
3
votes
2
replies
4.9k
views
Getting A List Of Satellite Repeats As Bed File From Ucsc [Repeatmasker]
mysql repeatmasker repeats
updated 9.8 years ago by 20 • written 11.7 years ago by 11k
9
votes
11
replies
13k
views
Plotting Read Density/ Distribution/ Composite Profiles [Chip-Seq]
chip-seq r ngs
updated 10.0 years ago by ★ 1.2k • written 11.8 years ago by 11k
107
votes
27
replies
27k
views
12 follow
Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
python next-gen
updated 2.3 years ago by 43k • written 12.0 years ago by 11k
1
vote
3
replies
3.4k
views
Publicly Available Bivalent Genes List [Mouse]
mouse chip-seq
10.6 years ago by Sukhi Singh 11k
0
votes
2
replies
2.4k
views
Which Are Proteins Not Binding At Promoters [Chip-Seq/Mouse]
chipseq chip-seq protein geo mouse
updated 10.7 years ago by ▴ 50 • written 11.0 years ago by 11k
33
votes
14
replies
6.8k
views
6 follow
No Reads Ever Map To First 3Million Bases Of Chromosomes In Mouse Genome! Why?
chipseq ngs mapping rna-seq
updated 10.7 years ago by 20 • written 11.1 years ago by 11k
7
votes
9
replies
10k
views
Mm9 Vs Mm10 [Why Is The Information Less In New Genome Build]
genome ucsc chip-seq
updated 10.7 years ago by 20 • written 11.7 years ago by 11k
0
votes
0
replies
3.3k
views
Identifying True Peaks From A Repetitive Peak Calling To Generate Variable Peakset Via Mocks Which Are Technical Replicates [Chip-Seq]
chipseq ngs peak-calling macs enrichment
10.9 years ago by Sukhi Singh 11k
17
votes
12
replies
4.1k
views
7 follow
Simple Redirection, I/O Problem With Bedtools
bedtools bash pipeline linux intersect
updated 11.2 years ago by 5.0k • written 11.2 years ago by 11k
2
votes
6
replies
3.2k
views
Human Genome Homology With Other Species [Genetic Similarity]
human mouse genome homology
updated 11.4 years ago by 3.5k • written 11.4 years ago by 11k
5
votes
4
replies
6.5k
views
Obtaining Expression Values (Fpkm) From Rna-Seq Data [Cufflinks/Cuffdiff]
cuffdiff rna-seq expression next-gen cufflinks fpkm
updated 11.4 years ago by 13k • written 11.4 years ago by 11k
8
votes
12
replies
20k
views
Tophat Error : Oserror: [Errno 2] No Such File Or Directory
tophat error rna-seq
updated 23 months ago by 43k • written 12.0 years ago by 11k
7
votes
8
replies
9.0k
views
Effective Genome Size Of Mm10 For Macs14
macs chip-seq
updated 2.2 years ago by 43k • written 11.5 years ago by 11k
1
vote
4
replies
3.4k
views
How Cufflinks Handle Same Gene Very Differently Expressed Between Two Biological Replicates[Rna-Seq]
rna-seq cufflinks rpkm expression
updated 11.5 years ago by 100k • written 11.5 years ago by 11k
1
vote
0
replies
3.1k
views
Refseq Gene Entry With Multiple Strand Information [Refgene Table-Mm10]
refseq ucsc chip-seq gene
11.7 years ago by Sukhi Singh 11k
3
votes
2
replies
1.9k
views
Half-Open And Closed Experiment Notation In Chip-Seq
coordinates bed
updated 11.7 years ago by ★ 2.4k • written 12.1 years ago by 11k
1
vote
4
replies
7.2k
views
Standard Fdr Threshold In Chip-Seq & How To Co-Relate It To Q-Value [Macs14]
macs chip-seq
updated 11.7 years ago by 26k • written 11.7 years ago by 11k
17
votes
8
replies
8.5k
views
Searching For A Simple Yet Powerful Workflow For Rna-Seq
rna-seq pipeline workflow
updated 11.7 years ago by ▴ 380 • written 12.0 years ago by 11k
5
votes
6
replies
6.4k
views
Mycoplasma Cell Culture Contamination Affecting High-Throughput Data [Chip-Seq & Rna-Seq]
rna-seq chip-seq
updated 11.7 years ago by 54k • written 11.8 years ago by 11k
6
votes
10
replies
6.0k
views
Hiding/Merging Child Annotations Terms Under The Parents [Gene Ontology]
chip-seq go gene-ontology
updated 11.7 years ago by ★ 2.9k • written 11.7 years ago by 11k
3
votes
3
replies
4.1k
views
How To Deal With Multiple Transcription Start Sites [Refseq || Chipseq]
chip-seq rna-seq refseq ucsc genes
updated 11.7 years ago by ★ 1.9k • written 11.7 years ago by 11k
4
votes
3
replies
4.8k
views
Go Visualization From A Set Of Peaks And Set Of Ontology Result Files
chip-seq go gene-ontology
updated 11.8 years ago by ★ 1.7k • written 11.8 years ago by 11k
22
votes
6
replies
14k
views
What Does Color Space And Nucleotide Space Mean (Data, Reference Genome Etc.) ?
next-gen sequencing chip-seq
updated 12.0 years ago by 3.8k • written 12.0 years ago by 11k
0
votes
2
replies
3.2k
views
Ucsc Knowngene List With Duplicate Entries [Promoter List Query]
ucsc chip-seq
updated 12.0 years ago by 161k • written 12.0 years ago by 11k
1
vote
4
replies
5.4k
views
Qpcr Gene Expression Fold Change Analysis : Which Simple Statistical Test Would Fit!!!!
statistics r gene
updated 12.0 years ago by ▴ 430 • written 12.0 years ago by 11k
3
votes
8
replies
4.4k
views
Fastqc 'Chip-Seq' Quality Score Reverse Pattern [Quality Increasing At Ends]
chip-seq fastqc
12.2 years ago by Sukhi Singh 11k
36 results • Page 1 of 1
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