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Posts by tianjunz
... Thanks for replying. This is the specific read I am looking at: chr20 0 chr20 13588261 1 8S75M2I15M * 0 0 AAGGAAGGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGCAGGAAGGAAGAGAAAGAAAAGGAAGGAAGGAAGGAAATGGAAGGAAGGAATGT 22222222222222222222222222222222222222 ...
... Hi everyone, I am recently using BWA-MEM for aligning human genome. I found that when a hit (hit A) with a higher score falls in a the extension of another hit (hit B) which computed previously, BWA-MEM doesn't do the extension for hit A. However, on the final output, BWA-MEM uses the alignment for ...
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