User: ashmc

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ashmc0
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Posts by ashmc

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Answer: A: How to download reference transcriptome file of species ?
... I would recommend going to NCBI and using their reference transcriptome - https://www.ncbi.nlm.nih.gov/genome/?term=drosophila%20melanogaster%20transcriptome ...
written 19 days ago by ashmc0
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Comment: C: Differential ChIP-Seq Analysis
... This is a useful resource! ...
written 3 months ago by ashmc0
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Comment: C: Differential ChIP-Seq Analysis
... Why would you not consider a method such as DiffBind? ...
written 3 months ago by ashmc0
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Answer: A: Intersect multiple bed and keep all fields
... This does not seem to work for me. It collapses some intervals together. ...
written 23 months ago by ashmc0
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Comment: C: Consensus of multiple BED files
... Nevermind. I ended up using BEDOPS and got it working fine. ...
written 23 months ago by ashmc0
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Comment: C: Consensus of multiple BED files
... Thank you Alex, this is helpful, however I have the problem where for some regions, there are no values. I am merging 30 or so files together. for example: chr9 121507304 140976434 2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2;2 chr10 0 103741188 chr10 103741188 104966662 chr10 104 ...
written 23 months ago by ashmc0

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