User: onemore100iq

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Posts by onemore100iq

<prev • 27 results • page 1 of 3 • next >
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DESeq2, function not found
... when I use this line ddsHTSeq <- DESeqDataSetFromHTSeqCount(sampleTable = sampleTable, directory = directory, design= ~ subtype) I got this error: could not find function DESeqDataSetFromHTSeqCount please help ...
rna-seq written 4 weeks ago by onemore100iq0 • updated 4 weeks ago by WouterDeCoster25k
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Comment: C: RNA-seq, R, DESeq2,
... Thanks. just one more question, How to do hierarchical clustering to cluster the transformed RNA-seq counts for a get gene set (x) and how to use sigclust2 on this transformed count matrix? Thank you so much in advance for helping a beginner, highly appreciated ...
written 4 weeks ago by onemore100iq0
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Comment: C: RNA-seq, R, DESeq2,
... Thank you so much, sir. I am just new to this field and sometimes getting confused between functions and arguments, and what should come next after this step, etc.... Anyway, thanks and highly appreciated your quick help. Thanks ...
written 4 weeks ago by onemore100iq0
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Comment: C: RNA-seq, R, DESeq2,
... Please, I need help with these 2 questions, I been trying for hours: after getting this matrixRLD, how to subset it so it includes a gene set that in table x in directory y? and if this table x has Enseml gene IDs and HGNC gene name how to get only HGNC gene names to be included in this new matrix? ...
written 4 weeks ago by onemore100iq0
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Comment: C: RNA-seq, R, DESeq2,
... Another 2 questions please, after getting this matrixRLD, how to subset it so it includes a gene set that in table x in directory y? and if this table x has Enseml gene IDs and HGNC gene name how to get only HGNC gene names to be included in this new matrix? Thanks in advance ...
written 4 weeks ago by onemore100iq0
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Comment: C: RNA-seq, R, DESeq2,
... Thank you so much, sir it worked perfectly ...
written 4 weeks ago by onemore100iq0
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RNA-seq, R, DESeq2,
... How to extract transformed counts from DESeqDataSet object as a matrix using assay? ...
rna-seq written 4 weeks ago by onemore100iq0 • updated 4 weeks ago by swbarnes23.0k
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Comment: C: pairwise comparison in R
... Thanks all. But once i read the covdesc differentally as follow: covdesc <- read.csv("covdesc.txt", sep="\t", header=T, stringsAsFactors = F) it worked from there to the end. Thanks again ...
written 4 weeks ago by onemore100iq0
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Comment: C: bioinformatics , R, pairwise comparison
... Any help, I been stuck in for too long, please any help. ...
written 5 weeks ago by onemore100iq0
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pairwise comparison in R
... Hi, I am trying to do pair<-pairwise.comparison(data.mas5, "celline", c("c.oh","5AzadC.48h"), data.raw) but it gave me this error Error in pms[, x] : subscript out of bounds This is the covde ...
R pairwise.comparison written 5 weeks ago by onemore100iq0 • updated 5 weeks ago by WouterDeCoster25k

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