User: daniel.naumovas

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Posts by daniel.naumovas

<prev • 9 results • page 1 of 1 • next >
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Comment: C: NCBI Genome Data Viewer help
... I have checked these legends but there is no information about colours that i ask. That pink is centromere is known from basic knowladge but others are still unknown, atleast for me. ...
written 12 days ago by daniel.naumovas0
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NCBI Genome Data Viewer help
... Hey guys, can somebody help me to identify what these colors on ideogram mean (picture included). ![Genome Data Viewer][1] There are Genome Data Viewer legends, but they do not tell anything about these colours (example: pink in upper ideogram or orange/greenin other one). Thank You. -DN! [ ...
genome written 13 days ago by daniel.naumovas0 • updated 12 days ago by RamRS20k
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Comment: A: GO enrichment analysis using R
... Tutorial page: https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/ PDF: https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/Simulated-07-Membership.pdf I am getting error after doing step 4b. ...
written 15 months ago by daniel.naumovas0
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GO enrichment analysis using R
... Hey, I am new to R, but already have successfully used WGCNA package to get interesting modules. Problem is when I try to perform GO enrichment analysis I am always getting same error : Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : object 'Ontology' not found Could somebody h ...
gene wgcna R written 15 months ago by daniel.naumovas0 • updated 9 months ago by Alexis Norris0
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Comment: C: Analysing Microarray Data In Bioconductor
... I have tried GEO2R, but you cant do normalization with it :/ Need normalized data to work with WGCNA ...
written 16 months ago by daniel.naumovas0
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Comment: C: Analysing Microarray Data In Bioconductor
... Hmm I cant think which column should be named FileName. Maybe your data is available in GEO db so i could use it as example? ...
written 16 months ago by daniel.naumovas0
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Comment: C: Analysing Microarray Data In Bioconductor
... Kevin i need a little bit more help :D, I am newbie at bioinformatics and especialy at working with R. When I use function: targetinfo <- readTargets("Targets.txt", sep="\t") I get this error: " Error in read.table(file, header = TRUE, stringsAsFactors = FALSE, sep = sep, : m ...
written 16 months ago by daniel.naumovas0 • updated 16 months ago by WouterDeCoster36k
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Comment: C: Analysing Microarray Data In Bioconductor
... Oh my, such a quick response! Thank you very much! ...
written 16 months ago by daniel.naumovas0
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Answer: A: Analysing Microarray Data In Bioconductor
... Hello, I would like to ask is it possible to use similar functions to work with Agilent data? If not, then can someone tell me where can i find something similar to work with Agilent data. Thank You ...
written 16 months ago by daniel.naumovas0

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Popular Question 14 months ago, created a question with more than 1,000 views. For GO enrichment analysis using R

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