User: eduardo

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eduardo10
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1 year ago
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Posts by eduardo

<prev • 17 results • page 1 of 2 • next >
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Comment: C: CWL: Make Enum optional (CommandInputEnumSchema)
... https://github.com/common-workflow-language/cwltool/issues/576 ...
written 12 months ago by eduardo10
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Comment: C: CWL: Make Enum optional (CommandInputEnumSchema)
... Awesome! Thank you very much! ...
written 12 months ago by eduardo10
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Comment: C: CWL: Make Enum optional (CommandInputEnumSchema)
... Any idea on how to make the enum an array? The following breaks: type: - "null" - type: enum[] The only way I found is custom type as the example mentioned by https://www.biostars.org/u/15908/ https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl/blob/master/tools/InterProScan ...
written 12 months ago by eduardo10
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Comment: C: CWL: Make Enum optional (CommandInputEnumSchema)
... Could you provide an example? I have tried a few alternatives with `null` but I couldn't make it work. ...
written 12 months ago by eduardo10
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CWL: Make Enum optional (CommandInputEnumSchema)
... Is it possible to make an Enum optional? outfmt: type: type: enum symbols: - clustal - clustal_num - fa - msf - nexus - phylip - selex ...
cwl written 12 months ago by eduardo10 • updated 12 months ago by Michael R. Crusoe1.1k
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CWL 'glob' field not capturing files
... In my workflow, I am unable to capture specific files using the 'glob' field from one of the step that outputs an array of files. The glob is ignored and I end up with all files. I have tried the following: outputs: sss_out: # type: File doesn't work. It has to be a file arra ...
cwl written 13 months ago by eduardo10 • updated 13 months ago by Michael R. Crusoe1.1k
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Comment: C: Filter array of files to one file
... valueFrom: $( self.filter(file => !!file.basename.match(/^.*\.ids\.txt$/)).pop() ) ...
written 13 months ago by eduardo10
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Comment: C: Filter array of files to one file
... I tried to acknowledge https://www.biostars.org/u/15908/, but I didn't found a way to link to a specific gitter message. Or were referring to this other post? https://www.biostars.org/p/282785/ I made another post because https://www.biostars.org/p/282785/ was about converting a file to string. The ...
written 13 months ago by eduardo10
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Answer: A: Filter array of files to one file
... Add an ExpressionTool step to filter: cwlVersion: v1.0 class: ExpressionTool requirements: { InlineJavascriptRequirement: {} } inputs: files: type: File[] expression: | ${ return {"ids": inputs.files.filter(file => !!file.basename.match(/^.*\.ids\.txt ...
written 13 months ago by eduardo10
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Answer: A: Filter array of files to one file
... Michael R. Crusoe point out a couple of solutions: At workflow level: in: single_file: source: other_step/array_of_files valueFrom: $(self[0]) ...
written 13 months ago by eduardo10

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Scholar 13 months ago, created an answer that has been accepted. For A: Filter array of files to one file
Scholar 13 months ago, created an answer that has been accepted. For A: Filter array of files to one file

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