User: haneenih7

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haneenih770
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PhD student

Posts by haneenih7

<prev • 53 results • page 1 of 6 • next >
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Comment: C: Can we compare two LD decay curves by statistical test to say they are different
... Very good. Now I understand your point. Thanks a lot! And with vcftools http://vcftools.sourceforge.net/man_latest.html I can define the physical window Example: `--ld-window-bp 100000` compute the LD between SNPs being maximum 100 kb apart ...
written 21 days ago by haneenih770
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Comment: C: Can we compare two LD decay curves by statistical test to say they are different
... You are right! The sample size of the two groups are very different, the cultivated group with 157 individuals, while the wild group is only 14 individuals. What do you mean by comparing the distance R^2=0.2? Just by saying: > Genome-wide linkage disequilibrium (LD) analyses revealed a faster ...
written 21 days ago by haneenih770
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Comment: C: Can we compare two LD decay curves by statistical test to say they are different
... This was my initial plan, but using paired t-test you compare the means between two related groups. Does it make sense to compare the two means of curves? ...
written 21 days ago by haneenih770
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Can we compare two LD decay curves by statistical test to say they are different?
... Hello, Is it possible to compare two curves and say they are different not just by eyes, but providing statistical test? Here is LD decay plot of two plant species. And by eyes, I see the difference in which the blue one decay faster at the beginning. The Genome-wide LD decay was calculated by P ...
R snp statistics written 22 days ago by haneenih770
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Comment: C: How to remove characters after specific symbol from all columns, and make all ch
... Yes, I managed to do it with awk and sed; To remove the last 6 characters from a file in each column ` awk '{for(i=1;i<=NF;i++) sub(/......$/,X,$i)}1' ` ...
written 5 weeks ago by haneenih770
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How to remove characters after specific symbol from all columns, and make all charachters sperated by space and comma except the first column
... Hi all, I am trying to modify the formate of a big file: The file is tab-delimited Here how the file looks like: AB11.1 CB:0078_0.53 CB:0044464_0.42 CB:0005623_0.466 AB10.1 AB01.2 CB:0036_0.4 CB:0003824_0.4 CB:0005575_0.7 CB:0005622_0.2 CB:0005623_0.6 AB01.2 CB:0036_0.3 ...
bash written 5 weeks ago by haneenih770 • updated 5 weeks ago by RamRS27k
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Comment: C: For each row retain the cell with maximum value in R
... The code is perfectly working. It was something to do with the input file. Thank you very much! I really appreciate your help :) ...
written 5 weeks ago by haneenih770
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Comment: C: For each row retain the cell with maximum value in R
... Yeah you are right ` head(test[,1])` Showed me the gene ID, but I have no idea, running the whole line, doesn't show the gene ID but anyway the good thing now it worked when making the first column as row names However, there is another problem. When a gene has only one GO-term, it leaves it emp ...
written 5 weeks ago by haneenih770
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Comment: C: For each row retain the cell with maximum value in R
... The data look like this, the same one I posted in the question as an example https://ibb.co/tP8xXzy with or without putting the first column as row names, I get the same error ...
written 5 weeks ago by haneenih770
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Comment: C: For each row retain the cell with maximum value in R
... I make the first column as row names. It's working now. Thanks a lot!!!!!! ...
written 5 weeks ago by haneenih770

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