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Comment: C: GSEA and IPA: alternative or complementary?
4.4 years ago by Mozart ▴ 330
3
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3
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2.9k
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GSEA and IPA: alternative or complementary?
RNA-Seq pathway analysis
updated 4.4 years ago by 13k • written 4.4 years ago by ▴ 330
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1.5k
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Comment: C: PCA plots and biological information taken from other principal components
4.4 years ago by Mozart ▴ 330
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1
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1.5k
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Comment: C: PCA plots and biological information taken from other principal components
4.4 years ago by Mozart ▴ 330
9
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7
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1.5k
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PCA plots and biological information taken from other principal components
pca plot RNA-Seq
4.4 years ago by Mozart ▴ 330
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0
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4.3k
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Comment: C: Trying to understand the maths behind one Limma function
4.4 years ago by Mozart ▴ 330
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4.3k
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Comment: C: Trying to understand the maths behind one Limma function
4.4 years ago by Mozart ▴ 330
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2
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4.3k
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Comment: C: Trying to understand the maths behind one Limma function
4.4 years ago by Mozart ▴ 330
30
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12
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4.3k
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Trying to understand the maths behind one Limma function
limma RNA-Seq batch-effect
updated 5 months ago by 44k • written 4.5 years ago by ▴ 330
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0
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734
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Comment: C: Question about model design in for RNA-seq experiment
4.5 years ago by Mozart ▴ 330
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1
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734
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Comment: C: Question about model design in for RNA-seq experiment
4.5 years ago by Mozart ▴ 330
2
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4
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734
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Question about model design in for RNA-seq experiment
deseq2 model design
4.5 years ago by Mozart ▴ 330
10
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7
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2.3k
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Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 16 months ago by 44k • written 5.3 years ago by ▴ 330
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2.3k
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Comment: C: Is trimming always better?
4.5 years ago by Mozart ▴ 330
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1
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2.3k
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Comment: A: Is trimming always better?
4.5 years ago by Mozart ▴ 330
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0
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953
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Advice on group specific condition effect and model matrix in deseq2
deseq2 batch-effect
updated 5 months ago by 44k • written 4.6 years ago by ▴ 330
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1
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1.4k
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Comment: C: Best statistical test when plotting normalised counts
4.6 years ago by Mozart ▴ 330
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1
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1.4k
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Comment: C: Best statistical test when plotting normalised counts
4.6 years ago by Mozart ▴ 330
0
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1
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1.4k
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Comment: C: Best statistical test when plotting normalised counts
4.6 years ago by Mozart ▴ 330
0
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1
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1.4k
views
Comment: C: Best statistical test when plotting normalised counts
4.6 years ago by Mozart ▴ 330
8
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10
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1.4k
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Best statistical test when plotting normalised counts
RNA-Seq deseq2
4.6 years ago by Mozart ▴ 330
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0
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4.7k
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Comment: C: Batch effect, how to create a model matrix
5.2 years ago by Mozart ▴ 330
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1
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4.7k
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Comment: C: Batch effect, how to create a model matrix
5.2 years ago by Mozart ▴ 330
0
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0
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5.1k
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Comment: C: adding batch variable in colData(dds)
5.2 years ago by Mozart ▴ 330
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0
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2.3k
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Comment: C: Is trimming always better?
5.3 years ago by Mozart ▴ 330
0
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0
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14k
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Comment: C: Using bootstrap testing in kallisto to obtain estimated transcript counts
5.3 years ago by Mozart ▴ 330
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0
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11k
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Comment: C: Is hierarchical clustering of significant genes 'supervised' or 'unsupervised' c
5.3 years ago by Mozart ▴ 330
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1
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11k
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Comment: A: Is hierarchical clustering of significant genes 'supervised' or 'unsupervised' c
5.3 years ago by Mozart ▴ 330
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1
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5.1k
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Comment: C: adding batch variable in colData(dds)
5.4 years ago by Mozart ▴ 330
0
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0
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5.1k
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Comment: C: adding batch variable in colData(dds)
5.4 years ago by Mozart ▴ 330
2
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7
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5.1k
views
adding batch variable in colData(dds)
deseq2
updated 5.4 years ago by ▴ 260 • written 5.4 years ago by ▴ 330
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0
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5.1k
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Comment: C: adding batch variable in colData(dds)
5.4 years ago by Mozart ▴ 330
0
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1
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4.7k
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Answer: A: Batch effect, how to create a model matrix
5.4 years ago by Mozart ▴ 330
9
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12
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4.7k
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Batch effect, how to create a model matrix
RNA-Seq deseq2 batch-effect
updated 5 months ago by 44k • written 5.4 years ago by ▴ 330
0
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1
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4.7k
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Comment: C: Batch effect, how to create a model matrix
5.4 years ago by Mozart ▴ 330
0
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1
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4.7k
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Comment: C: Batch effect, how to create a model matrix
5.4 years ago by Mozart ▴ 330
0
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1
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4.7k
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Comment: A: Batch effect, how to create a model matrix
updated 5.4 years ago by 104k • written 5.4 years ago by ▴ 330
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0
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2.4k
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
5.4 years ago by Mozart ▴ 330
0
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1
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1.4k
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Comment: C: same experiment, different values with my heat map. Any help?
5.4 years ago by Mozart ▴ 330
0
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1
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2.4k
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
5.4 years ago by Mozart ▴ 330
7
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14
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2.4k
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6 follow
General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
RNA-Seq trimmomatic trimming adapters
updated 5.4 years ago by 14k • written 5.5 years ago by ▴ 330
0
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0
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2.4k
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Comment: A: General question about batch effect, read trimming and what to do when the adapt
5.4 years ago by Mozart ▴ 330
0
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0
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2.4k
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
5.4 years ago by Mozart ▴ 330
0
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0
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8.7k
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Comment: C: Kallisto and downstream analysis with tximport and DESeq2
5.5 years ago by Mozart ▴ 330
0
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0
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2.4k
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
5.5 years ago by Mozart ▴ 330
0
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1
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2.4k
views
Answer: A: General question about batch effect, read trimming and what to do when the adapt
5.5 years ago by Mozart ▴ 330
3
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2
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1.5k
views
how to appropriately export datasets from R studio in an appropriate style?
R excel
updated 5.5 years ago by ▴ 120 • written 5.5 years ago by ▴ 330
1
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1
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1.2k
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how to get rid of redundancies in an RNA-seq experiment but preserving genes changing in opposite directions?
RNA-Seq data mining
updated 5.6 years ago by 13k • written 5.6 years ago by ▴ 330
124
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29
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40k
views
11 follow
PCA in a RNA seq analysis
RNA-Seq pca
updated 5.9 years ago by 28k • written 6.9 years ago by ▴ 330
13
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12
replies
3.3k
views
Network/Pathway Analysis from Mass Spec data
proteomics
6.0 years ago by Mozart ▴ 330
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