User: Doom

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Doom10
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@Doom3Gloom
Last seen:
3 years, 2 months ago
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3 years, 3 months ago
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d**********@gmx.com

Posts by Doom

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Cummerbund: Error in data.frame arguments imply differing number of rows
... Hi, I analysed some RNA-seq data with Galaxy, I was using cummeRbund on R to do some clustering and I realized that some genes are disappearing from the clusters. If I use the specific genes that "disappear" I am getting an error: > myGeneIds<- c("TNF","RELB") ...
cummerbund rna-seq error written 3.3 years ago by Doom10 • updated 3.2 years ago by handgabriel0
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GSEA Preranking algorithms
... I have done a RNA-seq analysis using Galaxy and my next step would be GSEA. Because it's a RNA-seq I need to pre-rank the gene list. I know that there are (at least?!) [two valid methods][1]: 1) use signed p-value 2) lower 90% confidence interval of the fold change The 1st is using sign of the fo ...
preranking gsea rna-seq written 3.3 years ago by Doom10

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