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Posts by Doom
... Hi, I analysed some RNA-seq data with Galaxy, I was using cummeRbund on R to do some clustering and I realized that some genes are disappearing from the clusters. If I use the specific genes that "disappear" I am getting an error: > myGeneIds<- c("TNF","RELB") ...
... I have done a RNA-seq analysis using Galaxy and my next step would be GSEA. Because it's a RNA-seq I need to pre-rank the gene list. I know that there are (at least?!) [two valid methods]: 1) use signed p-value 2) lower 90% confidence interval of the fold change The 1st is using sign of the fo ...
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