User: Doom
Doom • 10
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Posts by Doom
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... Hi,
I analysed some RNA-seq data with Galaxy, I was using cummeRbund on R to do some clustering and I realized that some genes are disappearing from the clusters. If I use the specific genes that "disappear" I am getting an error:
> myGeneIds<- c("TNF","RELB") ...
written 3.3 years ago by
Doom • 10
• updated
3.2 years ago by
handgabriel • 0
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... I have done a RNA-seq analysis using Galaxy and my next step would be GSEA. Because it's a RNA-seq I need to pre-rank the gene list. I know that there are (at least?!) [two valid methods][1]:
1) use signed p-value
2) lower 90% confidence interval of the fold change
The 1st is using sign of the fo ...
written 3.3 years ago by
Doom • 10
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