User: Silvia
Silvia • 10
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Posts by Silvia
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... Upps, I thought I replied directly to you! :)
Ok, I see the idea. Thank you very much for your help!!
Silvia
...
written 15 months ago by
Silvia • 10
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... thanks Kevin,
I obtained the FPKM values with RSEM using the same count matrix that I use to calculate the rlog. Do you have any idea of why these values seem wrong?
Also, I have plotted the same values from here https://xenabrowser.net/datapages/?cohort=GTEX using the GTEX data and same value (lo ...
written 15 months ago by
Silvia • 10
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... I have RNAseq data that I have normalized using RSEM with FPKM and when I make a boxplot per sample to see the normalization plotting the log2(FPKM+0.001), the boxplot is not very good: https://ibb.co/gYgNLm
On the other hand, when I plot the normalization using DEseq2 package with rlog, the boxplot ...
written 15 months ago by
Silvia • 10
• updated
5 days ago by
Charles Warden ♦ 6.1k
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