User: Dennis

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Dennis0
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Posts by Dennis

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Have Salmon output tabular files from Galaxy; need to import into R for DESeq2
... Hi there, I have Salmon output files from 9 samples - 3 biological replicates from 3 different treatment groups. I need to perform DE analysis on these Salmon output files. Firstly, from what I understand, it is uncouth to perform DE analysis on TPM values - I still don't understand why, since t ...
salmon deseq2 tpm rna-seq written 8 months ago by Dennis0 • updated 8 months ago by WouterDeCoster31k
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I am slightly confused about the input requirements for the differential expression tool - last step of Trinity
... **NOTE: I was advised to repost this thread here by a moderator of another Biostars forum - I am not intending to waste anyone's time, simply looking for more eyes for this question - it has not been answered to date** Hello all, I have a pressing question... To start with, I have read the Trinit ...
rna-seq written 9 months ago by Dennis0 • updated 9 months ago by Biostar ♦♦ 20

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