User: boyu93

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boyu930
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Posts by boyu93

<prev • 5 results • page 1 of 1 • next >
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Popular Structural Variant Simulator
... I found there are a lot of SV simulators, which one is popular these days? Thanks! I know about two years ago, several outstanding papers used SVsim. ...
wgs structural variant dna written 4 days ago by boyu930
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Comment: C: Picard ValidateSamFile error
... Thank you so much! We found out that it was caused during copying into the disk, the file is not complete with only first several chromosomes included. I'd better check the completeness first in the future. ...
written 4 days ago by boyu930
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Picard ValidateSamFile error
... I wanted to run Breakdancer but received an error `EOF marker is absent`. So I tried Picard `ValidateSamFile` to see if there are any errors inside. When I run Picard `ValidateSamFile`, I received the following error: ValidateSamFile Value for tag MC is not a String: class java.lang.Integer I ...
picard bam written 14 days ago by boyu930 • updated 14 days ago by Pierre Lindenbaum103k
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Comment: C: Any techniques faster than Breakdancer?
... That's what I want to find in this link, a compile of SV caller packages. Thanks a lot natasha. ...
written 5 weeks ago by boyu930
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Any techniques faster than Breakdancer?
... I have been using Breakdancer for structural variant detection, but it is running so slow, which takes more than 30 hours for a pair of tumor/normal samples as to WGS data. Are there any other methods which can do similar stuff but run faster? Thanks, ...
sv breakdancer structural variant dna written 5 weeks ago by boyu930 • updated 4 weeks ago by Eric T.1.9k

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