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Posts by cupplesa
... I am concerned that my IDBA-UD run had problems. Although the output contained a contigs.fa file, there was no scaffold.fa file generated. I changed the constant kMaxShortSequence in src/sequence/short_sequence.h to support my longer read length. Any suggestions would be appreciated, thanks. ...
... I have generated a diamond file by aligning a set of genes to a set of shotgun sequencing data. Could you recommend a software to analyze the data? The file is too big to manipulate in excel. I have tried Megan, but this seems to use only KEGG, SEED etc, not a set of predefined genes. ...
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