User: jth6974

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jth697410
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Posts by jth6974

<prev • 15 results • page 2 of 2 • next >
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How come Alignment length is longer than Subject sequence length?
... I just get a result of blastp. and The result is like below, 99.2 1880 2361 1882 13 0 3820 (Identical matches(%), Query Length(aa), Subject Length(aa), Alignment Length(aa), Number of gap openings, e-value, bitscore) How can it is possible? Is this because of the gap openings? ...
alignment blast blastp written 13 months ago by jth697410 • updated 13 months ago by h.mon29k
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Comment: C: can I identify the function of cluster with high identity of one gene?
... Really thanks for your kind advice. I will try to find orthologies between other genes in the Gene A cluster and genes in the Gene B cluster first. If there is some problem can I ask your advice next time? ...
written 13 months ago by jth697410
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can I identify the function of cluster with high identity of one gene?
... Let's say there is a secondary metabolites biosynthesis cluster in fungi A. and I just found out a homologous gene B(identitiy>=50% with nrps gene located in the cluster) from fungi B using blastp and also found that gene B is located in some gene cluster in fungi B genome using antiSMASH. My que ...
gene cluster tutorial antismash genecluster written 13 months ago by jth697410 • updated 13 months ago by Joe16k
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Comment: C: what is 'xml development headers' ?
... thanks a lot ! one more question ! how can I check which version of xml has been installed ? ...
written 2.0 years ago by jth697410
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How can I install xml development headers (version 2.9.1) and xz development headers(version 5.1.1) using ***sudo apt-get*** ?
... Hello. To install antiSMASH in Debian Linux 8, I have installed following dependencies except two of them. > **First, make sure you have the following antiSMASH dependencies installed**: > 1. diamond (version 0.8.36 tested) > 2. fasttree (version 2.1.7 tested) > 3. glimmer (vers ...
xml antismash written 2.0 years ago by jth697410 • updated 2.0 years ago by WouterDeCoster42k

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