User: jaafari.omid

gravatar for jaafari.omid
Reputation:
0
Status:
New User
Last seen:
2 weeks, 1 day ago
Joined:
10 months, 2 weeks ago
Email:
j***********@yahoo.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by jaafari.omid

<prev • 14 results • page 1 of 2 • next >
0
votes
3
answers
213
views
3
answers
Comment: C: Pool Whole Genome Sequencing
... Thank you very much, that is practically I wanted to know. ...
written 7 weeks ago by jaafari.omid0
0
votes
3
answers
213
views
3
answers
Comment: C: Pool Whole Genome Sequencing
... Yes, all of them are one species ...
written 7 weeks ago by jaafari.omid0
0
votes
3
answers
213
views
3
answers
Comment: C: Pool Whole Genome Sequencing
... For example each of my experimental groups totally have included by 30 fishes, and we are not going to do WGS individually, first we want to prepare 3 pool samples (each pool includes 10 fish in it with the same amount of input DNA from each fish) and then go for digestion and library preparation. A ...
written 7 weeks ago by jaafari.omid0
1
vote
3
answers
213
views
3
answers
Pool Whole Genome Sequencing
... Greeting and Salutation to everybody, I am involved in a project on fish and we are going to do pool whole genome sequencing but I don't know how many samples we can pool together. That should be 10, 12 or for example we can pool 30 samples for each group that we have? Actually what is the relations ...
snp written 7 weeks ago by jaafari.omid0 • updated 7 weeks ago by Kevin600
3
votes
2
answers
290
views
2
answers
SNP-chip Pros and Cons
... Hi all dears. I would be grateful if anyone could help me about generally advantages and disadvantages using of SNP-chips especially in GWAS! I mean how is their coverage, efficiencies and cost benefit ratio in comparison with some other methods like ddRAD and WGS? ...
snp written 4 months ago by jaafari.omid0 • updated 4 months ago by Kevin Blighe28k
0
votes
0
answers
200
views
0
answers
SNP Discovery Duration
... Hi Dears. I am Using Tassel3 (V1 pipeline) for GBS Analysis and Now I am in the Discovery SNPs step. I am doing this analysis with one sample because I am going to set it up. My question is how long this step (-TagsToSNPByAlignment) should take? I have allocated 20 CPUs to to run this step. It is no ...
snp written 6 months ago by jaafari.omid0 • updated 6 months ago by Kevin Blighe28k
0
votes
0
answers
261
views
0
answers
Comment: C: Tags to snp
... Yes, Actually I just now did it and that error was solved but another error appeared about -mUpd option. I guess if I wan to use -DiscoverySNPCallerPlugin, my command should completely change. Thanks for your helps. ...
written 6 months ago by jaafari.omid0
0
votes
0
answers
261
views
0
answers
Comment: C: Tags to snp
... Many thanks. But I am using the tassel 3, and the plugin name is -TagsToSNPByAlignmentPlugin for tassel3, So why it gives me that error? ...
written 6 months ago by jaafari.omid0
1
vote
0
answers
261
views
0
answers
Tags to snp
... Hi All Dears. This is Omid. I am using Tassel 3 (and 5). Now I am in the step entitled "TagsToSNPByAlignmentPlugin (the Discovery SNP Caller)" Unfortunately I faced with the error which says "java.lang.IllegalArgumentException: TasselPipeline: parseArgs: Unknown parameter: -TagsToSNPByAlignmen ...
snp written 6 months ago by jaafari.omid0 • updated 6 months ago by WouterDeCoster32k
0
votes
0
answers
436
views
0
answers
Comment: A: GC content in DNA sequnce
... And Is it possible to guide me about Kmer? based on my information Kmer is not important for RNAseq data but I don't know how much is it important for DNA sequences like GBS. using Stacks pipeline I trimmed the raw data but after that I still have kmer content. ...
written 8 months ago by jaafari.omid0

Latest awards to jaafari.omid

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1914 users visited in the last hour