User: jaafari.omid

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Posts by jaafari.omid

<prev • 22 results • page 1 of 3 • next >
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Comment: C: manhattan plot with Fst values
... I think I found the problem. This is the command which I was using: manhattan ("C:/user/omid/desktop/sample.txt", bp= "BP", chr= "CHR", p= "P", logp= FALSE, ylim=c(0,1)) but first I should introduce a variant for my input file I think., Like: x= read.delim("C:/user/omid/desktop/sample.tx ...
written 24 days ago by jaafari.omid0 • updated 24 days ago by RamRS19k
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manhattan plot with Fst values
... Hello all dears, Actually I was going to do a manhattan plot with the package (qqman). I have prepared a .txt file with 3 columns including "CHR", "BP" and "P". when I run my command it says that the column "CHR" not found. I will be so grateful if anybody can help me in this regard. Here is the com ...
software error snp written 24 days ago by jaafari.omid0 • updated 24 days ago by RamRS19k
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Comment: C: How to perform VennDiagram from a VCF file?
... Yes I have seen it already but if I've understood it correctly, it is for comparison between for example 3 .vcf files but for me it is just one .vcf file. ...
written 29 days ago by jaafari.omid0
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Comment: C: How to perform VennDiagram from a VCF file?
... Yes it is just a single .vcf file which is included by 130 samples and these 130 samples belong to 5 different groups or locations. So there is just one .vcf file. ...
written 29 days ago by jaafari.omid0
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Comment: C: How to perform VennDiagram from a VCF file?
... Thank you so much for your answer. Sorry maybe I couldn't completely catch what exactly you have mentioned. You mean I should generate an input file including all possible combinations between my populations in two columns (Chromosome and position)? So there is no needing to have a third column as S ...
written 29 days ago by jaafari.omid0
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How to perform VennDiagram from a VCF file?
... Hi all dears, I have a .VCF file which it is included by 5 populations. In this step I want to perform a VennDiagram but I don't know how can I do it? Actually what should be the input file to do it? should I use my .vcf file? Any solution and suggestion would be appreciated in advance. Cheers ...
genome venndiagram snp written 29 days ago by jaafari.omid0 • updated 29 days ago by shubhra.bhattacharya70
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Comment: C: Manhattan plot from GBS data
... Thank you very much for the great help ...
written 5 weeks ago by jaafari.omid0
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Manhattan plot from GBS data
... Hi dears all, I have a .VCF file from GBS data and now want to perform a Manhattan plot. Should I convert it to a specific format or can I use it straightforward? Thanks in advance ...
snp written 5 weeks ago by jaafari.omid0 • updated 19 days ago by Biostar ♦♦ 20
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Comment: C: Pool Whole Genome Sequencing
... Thank you very much, that is practically I wanted to know. ...
written 4 months ago by jaafari.omid0
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Comment: C: Pool Whole Genome Sequencing
... Yes, all of them are one species ...
written 4 months ago by jaafari.omid0

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