User: Victor
Victor • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- Australia
- Last seen:
- 7 months, 3 weeks ago
- Joined:
- 2 years, 11 months ago
- Email:
- w*******@uni.sydney.edu.au
Posts by Victor
<prev
• 6 results •
page 1 of 1 •
next >
1
vote
1
answer
160
views
1
answer
... Hi,
According to the post of Kevin Blighe, https://www.biostars.org/p/379208/#379295
I am wondering how to plot the genotype of every SNP for a single sample. Are there any R-packages can be used?
...
0
votes
0
answers
468
views
0
answers
... Hello,
I have a ped/map files generated from illumina final report by perl script.
Then I found out that I have many "-" in the allele1 or allele2. I check the perl script and the script will make "-" into "0".
Anyway, I am doing the position selection and I dont need the 0 in my plink file (raw ...
written 2.0 years ago by
Victor • 10
0
votes
0
answers
528
views
0
answers
... Hello,
I try to use selscan to compute the value of xpehh by selscan. But when I try to run it. I got the error message about the two dataset need have same loci?
I am not sure what is the same mean and how to make the same loci from two populations for XPEHH process by SELSCAN?
I feed the vcf fil ...
written 2.1 years ago by
Victor • 10
0
votes
0
answers
787
views
0
answers
... Hello
I have 2 datasets and want to analysis the XPEHH scores by selscan.
I used plink and beagle to pre-process my datasets.
When I try to run the selscan. my datasets have same haplotypes but not the same loci in my map file? I dont understand why my map file can not work in selscan. Do you hav ...
written 2.3 years ago by
Victor • 10
0
votes
0
answers
1.2k
views
0
answers
... Hello,
I am trying to get the XP-EHH values by using HP-EXX. (https://github.com/joepickrell/xpehh) .
I only have map and ped plink files in two populations.
So
1. I used plink function --recode vcf, to make vcf files (preQC had been done, plus --snp-only -just acgt).
2. Eeagle was applied to phase ...
written 2.3 years ago by
Victor • 10
• updated
4 months ago by
shanshuwen90 • 0
2
votes
1
answer
1.3k
views
1
answer
... Hello
I am the first year PhD student in University .
Basically, I'm new to PLINK (obviously). Sorry for asking quite a silly question.
I am doing the selection signal with canine and try to use the HP-EXX (https://github.com/joepickrell/xpehh) to get the haplotype score.
However, I only have ...
Latest awards to Victor
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2225 users visited in the last hour