User: Victor
Victor • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- Australia
- Last seen:
- 6 months ago
- Joined:
- 2 years ago
- Email:
- w*******@uni.sydney.edu.au
Posts by Victor
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... Hello,
I have a ped/map files generated from illumina final report by perl script.
Then I found out that I have many "-" in the allele1 or allele2. I check the perl script and the script will make "-" into "0".
Anyway, I am doing the position selection and I dont need the 0 in my plink file (raw ...
written 13 months ago by
Victor • 10
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... Hello,
I try to use selscan to compute the value of xpehh by selscan. But when I try to run it. I got the error message about the two dataset need have same loci?
I am not sure what is the same mean and how to make the same loci from two populations for XPEHH process by SELSCAN?
I feed the vcf fil ...
written 14 months ago by
Victor • 10
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... Hello
I have 2 datasets and want to analysis the XPEHH scores by selscan.
I used plink and beagle to pre-process my datasets.
When I try to run the selscan. my datasets have same haplotypes but not the same loci in my map file? I dont understand why my map file can not work in selscan. Do you hav ...
written 16 months ago by
Victor • 10
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... Hello,
I am trying to get the XP-EHH values by using HP-EXX. (https://github.com/joepickrell/xpehh) .
I only have map and ped plink files in two populations.
So
1. I used plink function --recode vcf, to make vcf files (preQC had been done, plus --snp-only -just acgt).
2. Eeagle was applied to phase ...
written 17 months ago by
Victor • 10
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... Hello
I am the first year PhD student in University .
Basically, I'm new to PLINK (obviously). Sorry for asking quite a silly question.
I am doing the selection signal with canine and try to use the HP-EXX (https://github.com/joepickrell/xpehh) to get the haplotype score.
However, I only have ...
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