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Posts by LeWöps
... Hi, For a large-scale genome analysis, I am looking a set of bacterial reference genomes. An ideal set would contain around 1-10k whole genomes that cover a broad range of bacteria, have a certain dissimilarity to each other and do not cover the same organisms multiple times (i.e. not multiple stra ...
... Dear all, I have some trouble getting blast (command-line) and biopython work together. I want a pipeline that runs a single protein query against a blast database, and returns a multiple sequence alignment of hits into python, where I can do further analysis on it. In tblastn, I can choose the ...
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