User: Sen

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Sen0
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Mapping Reads Back To Assembly Contigs To Generate Pileup
... I am trying to map the raw reads of a genome back to its assembled genome to generate the pileup. I downloaded the raw reads (fasta and qual files) from NCBI Trace Archive. Because they are long reads, I used BWA to align them against the assembled genome. I used samtools to generate the pileup. Eve ...
pileup bwa coverage written 6.9 years ago by Sen0 • updated 5 months ago by Biostar ♦♦ 20

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