User: azotov

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azotov10
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New User
Location:
UAB, Birmingham AL, USA
Last seen:
5 months, 2 weeks ago
Joined:
10 months, 2 weeks ago
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a*****@uab.edu

Posts by azotov

<prev • 4 results • page 1 of 1 • next >
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Comment: A: What in is a comprehensive source for protein function annotations?
... Thanks a lot for proposing the sources! I looked at both, and from what I could see, they both primarily based on UniProt entries. I have downloaded UniProt Swiss and Trembl earlier from (https://www.uniprot.org/downloads). Do the UniProt annotations include GOA and/or InterPro annotations, or the I ...
written 6 months ago by azotov10
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What in is a comprehensive source for protein function annotations?
... I am trying to group peptide sequences according to the protein functions for further filtering and analysis, and I wonder what is the best and the most comprehensive source of protein function annotations. I downloaded the NCBI RefSeq and UniProt (both Swiss and Trembl) separately with annotations ...
annotations written 6 months ago by azotov10
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Comment: C: Load data from NCBI .gpff files into a SQL database. Looking for a quicker way.
... Works like a charm! Thanks Pierre ...
written 10 months ago by azotov10
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Load data from NCBI .gpff files into a SQL database. Looking for a quicker way.
... I'm trying to load NCBI reference sequence data (from fftp://ftp.ncbi.nlm.nih.gov/refseq/release/complete/complete.nonredundant_protein.1.protein.gpff.gz) into an SQL server for further processing. I'm using a straightforward method with BioPython of parsing the text file with seqIO.parse() and then ...
biopython sql bioseqdatabase written 10 months ago by azotov10

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