User: NestorVB

gravatar for NestorVB
NestorVB20
Reputation:
20
Status:
New User
Location:
Sweden/Stockholm/Karolinska Institutet
Last seen:
20 hours ago
Joined:
1 week, 3 days ago
Email:
n*************@gmail.com

Posts by NestorVB

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Fastq file quality represented in bars with python
... Got the solution in stackoverflow: https://stackoverflow.com/questions/47336414/using-sed-transliterate-command-in-python Thanks anyways ...
written 7 days ago by NestorVB20
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Fastq file quality represented in bars with python
... Hej guys, So there is this sed command that allows you to transform the quality code into bar simbols: sed -e 'n;n;n;y/!"#$%&'\''()*+,-.\/0123456789:;<=>?@ABCDEFGHIJKL/▁▁▁▁▁▁▁▁▂▂▂▂▂▃▃▃▃▃▄▄▄▄▄▅▅▅▅▅▆▆▆▆▆▇▇▇▇▇██████/' myfile.fastq I have been checking ways to do the same in python, but I h ...
python fastq sed quality bars written 8 days ago by NestorVB20
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Comment: C: Selecting fastq sequences
... Thank you very much! This was really useful, it still did not solve my problem directly, but I realized I was making it unnecessarily complicated and decided to rewrite the code creating first list/sets for the files of sequences and barcodes and then look through them in a more simple loop. I find ...
written 10 days ago by NestorVB20
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Comment: C: Selecting fastq sequences
... I dont really understand how it works =\ ...
written 10 days ago by NestorVB20
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Selecting fastq sequences
... Hello everyone! So, I am new in python (just did 1 week crash course), and a colleague asked for my help to create a little python3 program that would input a fastq file, a sequence query, a barcode file and an output file, and would find him all the individual barcodes (from the barcode file) that ...
python fastq for loop written 10 days ago by NestorVB20 • updated 10 days ago by Corentin100

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