User: maksjytov.nail

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Posts by maksjytov.nail

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Entrez Direct's problem
... I tried `sudo cpan install LWP::Protocol::https` and `sudo cpan install Bundle::LWP` but still can't to run Entrez. After first command I have the message: > Test Summary Report t/apache.t (Wstat: 768 Tests: 5 Failed: 3) > Failed tests: 1, 3-4 Non-zero exit status: 3 t/https_proxy.t ...
written 10 weeks ago by maksjytov.nail0
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Comment: C: Entrez Direct's problem
... Ok, got it. How can I install this perl module on mac? I tried google but nothing found. ...
written 10 weeks ago by maksjytov.nail0
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Entrez Direct's problem
... Hello. I have a problem with using Entrez Direct. I'm currently reading "Biostar handbook" and carefully followed the instructions written in that book about installing Entrez Direct. But I get a message error: > 501 Protocol scheme 'https' is not supported (LWP::Protocol::https not > instal ...
software error entrez_direct written 10 weeks ago by maksjytov.nail0 • updated 4 weeks ago by Biostar ♦♦ 20
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(Closed) Primary neoplasm melanoma dx
... Hello. What "dx" mean in ''Primary neoplasm melanoma dx"? I googled it but it didn't help. ...
cancer written 6 months ago by maksjytov.nail0
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MCP counter's problems
... Hello. I need to produce analysis on this study http://www.cbioportal.org/study?id=skcm_tcga#summary I downloaded the datasets and among then found the file > data_RNA_Seq_v2_expression_median.txt Next I need to count infiltrating cells with R package MCP-counter. So I have RNA-expression file ...
R rna-seq written 6 months ago by maksjytov.nail0 • updated 4 months ago by Etienne Becht10
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SPAdes assembler error "The number of reads in file with interlaced reads is ODD"
... Hello. I try to assembly genomes from [this project][1] with SPAdes assembler with parameters --12 ( File with interlaced forward and reverse paired-end reads.) but I get the error "The number of reads in file with interlaced reads is ODD"! What I do wrong? I read manual many times but this didn' ...
assembly written 13 months ago by maksjytov.nail0

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