User: japhethgado

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Posts by japhethgado

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Comment: C: Predicting Disulfide Bonds For Proteins With Many Cysteine Residues.
... I have fasta files of the sequences and pdb files of the homology models (which were made with SwissModel). ...
written 11 months ago by japhethgado0
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Predicting Disulfide Bonds For Proteins With Many Cysteine Residues.
... I have a set of proteins which have a lot of cysteines (more than 20 in each). I have made homology models for these proteins but need to predict the disulfide bonds/connectivity. I tried using [DISULFIND][1] but it is unable to predict connectivity for sequences with more than 10 cysteines. Has a ...
protein structure disulfide bond program written 11 months ago by japhethgado0
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Comment: C: How to Manually Edit Protein MSA
... Thank you. Using UGene, it is possible to remove columns with more than a specified threshold of gaps. I used 99% (so columns with more than 99% gaps are removed). Does this achieve the same result? ...
written 11 months ago by japhethgado0

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