User: mah19
mah19 • 0
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Posts by mah19
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... Hello,
I am trying to run defuse to detect gene fusion in mouse RNA-Seq data.
Anyone has an idea of how to adjust the config.txt file to run with the proper mus_musculus references?
The defuse_run.pl file as well seems to be hard coded to get Homo-sapiens reference files from Ensembl website.
Thank ...
written 6 months ago by
mah19 • 0
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... Hello Hussain,
Thank you for your reply.
Unless I m doing something wrong IGV will only show you one section of the variant at as it aligns to its location on the genome.
I am interested to see how TSVs connect different genomic regions together in a graphical manner.
Thanks ...
written 10 months ago by
mah19 • 0
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... Hello,
I have generated transcription structural variant files from RNA-Seq data in Bedpe format by running chimeric Bam files with SQUID.
Is there a way to visualize these files and locate the variants on their relevant positions on the reference genome, ie some tool that can show the variants a ...
written 10 months ago by
mah19 • 0
• updated
10 months ago by
Hussain Ather • 880
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