User: dakterl79

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dakterl7920
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Posts by dakterl79

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Calculating bisulfite conversion rates?
... Hi, I am trying to calculate the bisulfite conversion rates for whole genome bisulfite sequencing dataset. The bisulfite conversion rate of each base (non-CpG) can be calculated as T / (T + C) * 100, where T is thymine and C is cytosine read numbers on that base. Below is from the aligned (by bi ...
methylome wgbs written 3.2 years ago by dakterl7920
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How to adjust p-values obtained by pairwise comparison of treatments, but I have multiple treatments?
... My experiment have several treatments (e.g. A, B, and C). If I have interest in differentially expressed genes (DEGs) over all treatments, ANOVA will be good enough. However, my major focus is identification of DEGs between two treatments, but came into trouble with adjusting p-values. What will b ...
multiple testing correction rna-seq q-value written 3.2 years ago by dakterl7920 • updated 3.2 years ago by dariober11k

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