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Posts by dakterl79
... Hi, I am trying to calculate the bisulfite conversion rates for whole genome bisulfite sequencing dataset. The bisulfite conversion rate of each base (non-CpG) can be calculated as T / (T + C) * 100, where T is thymine and C is cytosine read numbers on that base. Below is from the aligned (by bi ...
How to adjust p-values obtained by pairwise comparison of treatments, but I have multiple treatments?
... My experiment have several treatments (e.g. A, B, and C). If I have interest in differentially expressed genes (DEGs) over all treatments, ANOVA will be good enough. However, my major focus is identification of DEGs between two treatments, but came into trouble with adjusting p-values. What will b ...
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