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187
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WGS trimming end of the reads for specific bp before alignment and call somatic variants
read trim WGS somatic variant
5 months ago by woongjaej ▴ 20
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0
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352
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Comment: Comment: Curious about way to start scRNA-seq analysis and machine learning using gene ex
9 months ago by woongjaej ▴ 20
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2
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352
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Curious about way to start scRNA-seq analysis and machine learning using gene expression data
learning python cell single RNA-seq R machine
9 months ago by woongjaej ▴ 20
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1.8k
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Comment: Comment: mapping rate of small rna-seq with different references
9 months ago by woongjaej ▴ 20
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173
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How can I understand aggregate in FAN-C tool using Hi-C data?
Hi-C TAD FAN-C aggregate fanc
9 months ago by woongjaej ▴ 20
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1
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1.7k
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How to analysis 4c seq 3c seq data
3c seq 4c seq alignment
updated 23 months ago by ▴ 90 • written 5.0 years ago by ▴ 20
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1.4k
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Comment: C: What does DESeq2 non symmetric MA plot mean in differential analysis?? (hi-chip)
2.2 years ago by woongjaej ▴ 20
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5
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1.4k
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What does DESeq2 non symmetric MA plot mean in differential analysis?? (hi-chip)
Hi-ChIP DESeq2 MA plot differential analysis
updated 2.2 years ago by 70k • written 2.2 years ago by ▴ 20
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0
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1.4k
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Comment: C: What does DESeq2 non symmetric MA plot mean in differential analysis?? (hi-chip)
2.2 years ago by woongjaej ▴ 20
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2
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1.8k
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mapping rate of small rna-seq with different references
smRNA-seq mapping rate reference
9 months ago by woongjaej ▴ 20
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3.4k
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Comment: C: DESeq2 DEG analysis using different sequencing depth data
4.5 years ago by woongjaej ▴ 20
2
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10
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3.4k
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DESeq2 DEG analysis using different sequencing depth data
deseq2 RNA-Seq sequencing depth DEG
updated 4.5 years ago by 34k • written 4.5 years ago by ▴ 20
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0
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3.4k
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Comment: C: DESeq2 DEG analysis using different sequencing depth data
4.5 years ago by woongjaej ▴ 20
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1
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3.4k
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Comment: C: DESeq2 DEG analysis using different sequencing depth data
4.5 years ago by woongjaej ▴ 20
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0
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3.4k
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Comment: C: DESeq2 DEG analysis using different sequencing depth data
4.5 years ago by woongjaej ▴ 20
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0
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3.4k
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Comment: C: DESeq2 DEG analysis using different sequencing depth data
4.5 years ago by woongjaej ▴ 20
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0
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1.0k
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qualimap transcript coverage profile truncated in smRNA-seq( ENCODE PIPELINE)
qaulimap2 smRNA-seq STAR
4.7 years ago by woongjaej ▴ 20
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0
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810
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Comment: C: sequencing of control sample in ChIP-seq??
4.8 years ago by woongjaej ▴ 20
1
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2
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810
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sequencing of control sample in ChIP-seq??
ChIP-Seq sequencing
updated 4.8 years ago by 103k • written 4.8 years ago by ▴ 20
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2.2k
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Comment: C: Are merged bam files and merge fastq file -> bam files same?
5.1 years ago by woongjaej ▴ 20
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1
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2.2k
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Comment: C: Are merged bam files and merge fastq file -> bam files same?
5.1 years ago by woongjaej ▴ 20
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6
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2.2k
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Are merged bam files and merge fastq file -> bam files same?
sequencing bam merge
updated 5.1 years ago by 103k • written 5.1 years ago by ▴ 20
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2
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2.7k
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Cutadapt using issue
cutadapt trimming trim_galore
updated 5.1 years ago by 20 • written 5.3 years ago by ▴ 20
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3.4k
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Comment: C: smRNA-seq adapter trimming cutadapt
5.2 years ago by woongjaej ▴ 20
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1
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3.4k
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Comment: C: smRNA-seq adapter trimming cutadapt
5.2 years ago by woongjaej ▴ 20
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5
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3.4k
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smRNA-seq adapter trimming cutadapt
cutadapt smRNA-seq trimming Illumina
5.2 years ago by woongjaej ▴ 20
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0
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2.7k
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Comment: C: Cutadapt using issue
5.3 years ago by woongjaej ▴ 20
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0
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3.5k
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Comment: C: trimming RNA-seq reads with adapter sequence?index? using trimmomatic
5.3 years ago by woongjaej ▴ 20
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1
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3.5k
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Comment: C: trimming RNA-seq reads with adapter sequence?index? using trimmomatic
5.3 years ago by woongjaej ▴ 20
1
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4
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3.5k
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trimming RNA-seq reads with adapter sequence?index? using trimmomatic
RNA-Seq trimmomatic adapter trim
updated 5.3 years ago by ▴ 820 • written 5.3 years ago by ▴ 20
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0
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2.5k
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Comment: C: Identify differentially expressed genes in scatter plot
5.3 years ago by woongjaej ▴ 20
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0
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7.3k
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Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
5.3 years ago by woongjaej ▴ 20
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3
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2.5k
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Identify differentially expressed genes in scatter plot
RNA-Seq scatter plot DEG
updated 5.3 years ago by ▴ 970 • written 5.3 years ago by ▴ 20
1
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0
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1.3k
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Comment: C: occupancy at common specific TF binding sites
5.3 years ago by woongjaej ▴ 20
0
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1
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7.3k
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Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
5.3 years ago by woongjaej ▴ 20
0
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1
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1.3k
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Comment: C: occupancy at common specific TF binding sites
5.3 years ago by woongjaej ▴ 20
1
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4
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1.3k
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occupancy at common specific TF binding sites
ChIP-Seq R peak density bins
updated 5.3 years ago by 84k • written 5.3 years ago by ▴ 20
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1
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7.3k
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Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
5.3 years ago by woongjaej ▴ 20
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