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10
votes
9
replies
4.3k
views
Remove sequences with (50% gaps) from MSA
Multiple-Sequence-Alignment sequence MSA alignment
updated 14 months ago by ★ 28k • written 4.4 years ago by ▴ 90
0
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0
replies
41k
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Comment: Comment: Pca From Vcf Files
3.1 years ago by nataliagru1 ▴ 90
0
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1
reply
9.8k
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Comment: Comment: Getting Haplotypes from a VCF file
3.3 years ago by nataliagru1 ▴ 90
0
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0
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5.6k
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Comment: Comment: Multiple Psi-Blast Iterations From Command Line Using Remote Database
3.3 years ago by nataliagru1 ▴ 90
0
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0
replies
1.9k
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Comment: C: Error while reading mlc file from CODEML into ggtree/treeio in R
3.7 years ago by nataliagru1 ▴ 90
0
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1
reply
2.6k
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Comment: Comment: Identifying Private SNPs between multi sample vcf files.
3.3 years ago by nataliagru1 ▴ 90
0
votes
1
reply
10k
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Comment: C: Preparing a .genome file for snpEff
3.9 years ago by nataliagru1 ▴ 90
0
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1
reply
4.0k
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Comment: C: Clarification for using PSI-BLAST to generate a PSSM (am I doing it right?)
4.0 years ago by nataliagru1 ▴ 90
0
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0
replies
5.6k
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Comment: C: Multiple Psi-Blast Iterations From Command Line Using Remote Database
4.0 years ago by nataliagru1 ▴ 90
1
vote
3
replies
2.6k
views
Identifying Private SNPs between multi sample vcf files.
vcftools bcftools vcf-compare bcftools isec
updated 3.0 years ago by ▴ 110 • written 4.1 years ago by ▴ 90
0
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1
reply
19k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
4.1 years ago by nataliagru1 ▴ 90
0
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0
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19k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
4.1 years ago by nataliagru1 ▴ 90
0
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0
replies
19k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
4.1 years ago by nataliagru1 ▴ 90
1
vote
1
reply
3.5k
views
Comment: C: Count total number of Homozygous/Heterozygous SNPs from VCF file
4.4 years ago by nataliagru1 ▴ 90
0
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0
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3.5k
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Comment: C: Count total number of Homozygous/Heterozygous SNPs from VCF file
4.4 years ago by nataliagru1 ▴ 90
2
votes
4
replies
3.5k
views
Count total number of Homozygous/Heterozygous SNPs from VCF file
SNP VCF allele
updated 4.4 years ago by 6.7k • written 4.4 years ago by ▴ 90
0
votes
0
replies
1.9k
views
Comment: C: BLASTn output format start position larger than stop position
4.4 years ago by nataliagru1 ▴ 90
2
votes
3
replies
1.9k
views
BLASTn output format start position larger than stop position
BLAST blastn blastn output blast outfmt 6
updated 4.4 years ago by 5.3k • written 4.4 years ago by ▴ 90
0
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0
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4.3k
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Comment: C: Remove sequences with (50% gaps) from MSA
4.4 years ago by nataliagru1 ▴ 90
0
votes
0
replies
4.3k
views
Comment: C: Remove sequences with (50% gaps) from MSA
4.4 years ago by nataliagru1 ▴ 90
0
votes
0
replies
1.0k
views
Is it acceptable to use ShapeIT for parasite genomes?
impute2 ShapeIT BEAGLE haplotype Phasing
updated 4.5 years ago by 20 • written 5.1 years ago by ▴ 90
1
vote
0
replies
8.0k
views
Answer: A: PopGenome software: concatenating chromosomes and coalescent simulations
updated 4.9 years ago by 44k • written 5.1 years ago by ▴ 90
0
votes
1
reply
7.8k
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Comment: C: Vcftools Runs Of Homozygosity Option
5.1 years ago by nataliagru1 ▴ 90
0
votes
0
replies
3.6k
views
Answer: A: formating for fineSTRUCTURE input
5.2 years ago by nataliagru1 ▴ 90
1
vote
1
reply
1.5k
views
Merge phased files from ShapeIT
ShapeIT Phasing
updated 5.2 years ago by 8.3k • written 5.2 years ago by ▴ 90
3
votes
0
replies
6.7k
views
Answer: A: Generating genetic map file to use as input for shapeit
5.2 years ago by nataliagru1 ▴ 90
0
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0
replies
2.3k
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Comment: C: PopGenome tutorial files
5.2 years ago by nataliagru1 ▴ 90
0
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1
reply
6.7k
views
Comment: C: Generating genetic map file to use as input for shapeit
5.2 years ago by nataliagru1 ▴ 90
0
votes
0
replies
2.2k
views
Comment: C: Help Interpreting PopGenome sliding window analysis for nucleotide diversity?
5.2 years ago by nataliagru1 ▴ 90
1
vote
1
reply
2.3k
views
Answer: A: PopGenome tutorial files
5.3 years ago by nataliagru1 ▴ 90
0
votes
1
reply
2.2k
views
Help Interpreting PopGenome sliding window analysis for nucleotide diversity?
PopGenome sliding.window.transform
5.3 years ago by nataliagru1 ▴ 90
0
votes
0
replies
1.0k
views
Can I run population genetics stats on my phased datasets?
R genome tajimas D population genetics
5.4 years ago by nataliagru1 ▴ 90
1
vote
0
replies
9.1k
views
Comment: C: Substituting Snps On Reference Genome Assemblies
6.1 years ago by nataliagru1 ▴ 90
0
votes
0
replies
3.0k
views
Comment: C: SNPhylo does not obey number of autosome chromosomes
6.1 years ago by nataliagru1 ▴ 90
0
votes
2
replies
9.1k
views
Comment: Comment: Substituting Snps On Reference Genome Assemblies
6.2 years ago by nataliagru1 ▴ 90
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