User: a_liberzon
a_liberzon • 0
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Posts by a_liberzon
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... Another thought along the same lines. Once you have GSEA results as described above, you can compare ES (not NES) scores say, by a paired tTest for each of the enriched sets. ...
written 3.0 years ago by
a_liberzon • 0
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... Why not trying two runs of standard (not pre-ranked) GSEA? Prepare a single GCT file with all your data, such that rows are probe set IDs, columns are samples for all perturbations (treatment A, treatment B and Controls). Next define a CLS file with the relevant 3 phenotype classes. Finally, run GSE ...
written 3.0 years ago by
a_liberzon • 0
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... Try our Investigate Gene Sets tool online at http://software.broadinstitute.org/gsea/msigdb/index.jsp
Note that your list should not exceed 2,000 gene (or protein) identifiers, and that the online tool will only show up to 100 most significant results. If you have many lists like that, then I'd rec ...
written 3.0 years ago by
a_liberzon • 0
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