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Posts by jana
... Without -h output.BAM has a header but IGV will not show any reads. In my case was necessary to add -h to display output.bam correctly samtools view -b -h input.bam "Chr10:18000-45500" > output.bam ...
... **RE Q1:** There is a README.txt included in the installation package that describes the output files. You will find it [here] Very useful [discussion] (though somewhat chaotic) **To summarize it:** - install instructions on the Broad Institute's web are no longer valid - here is the late ...
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