User: jana

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jana50
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Posts by jana

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Comment: C: Extract Reads From A Bam File That Fall Within A Given Region
... Without -h output.BAM has a header but IGV will not show any reads. In my case was necessary to add -h to display output.bam correctly samtools view -b -h input.bam "Chr10:18000-45500" > output.bam ...
written 7 months ago by jana50
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Answer: A: MutSigCV output and coMut plots
... **RE Q1:** There is a README.txt included in the installation package that describes the output files. You will find it [here][1] Very useful [discussion][2] (though somewhat chaotic) **To summarize it:** - install instructions on the Broad Institute's web are no longer valid - here is the late ...
written 7 months ago by jana50

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Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Extract Reads From A Bam File That Fall Within A Given Region

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