User: erarroji

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erarroji0
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Posts by erarroji

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Comment: C: Picard CollectHsMetrics malfunctioning
... I really thank you it has been really useful ...
written 4 days ago by erarroji0
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Comment: C: Picard CollectHsMetrics malfunctioning
... Already did. Coverage depth, mean coverage and off target. ...
written 4 days ago by erarroji0
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Comment: C: Picard CollectHsMetrics malfunctioning
... Thank you Pierre, i've been struggling with this all week. It is exactly the same mistake, but my input files are ok. Could you suggest me another software for calculate the metrics? Thank you ...
written 4 days ago by erarroji0
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Picard CollectHsMetrics malfunctioning
... I tried to run CollectHsMetrics, this is my command: java -jar /picard.jar CollectHsMetrics \ I=190.sortedDeDup.bam \ O=190_hs_metrics.txt \ R=ucsc.hg19.fasta \ BAIT_INTERVALS=AgilentSSV6_bait_list.interval_list \ TARGET_INTERVALS=V6SureSelect/AgilentSSV6_targets_list.interval_list it works ok unt ...
picard ngs wes collecthsmetrics written 4 days ago by erarroji0 • updated 4 days ago by Pierre Lindenbaum102k

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