User: suran.nambisan
suran.nambisan • 0
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Posts by suran.nambisan
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Comment:
C: MyCC not producing any bins
... Hello Kevin
MyCC.py worked on Ubuntu 16.04 OS and produced output files after clustering.
Thanks
Suran ...
written 4 weeks ago by
suran.nambisan • 0
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Comment:
A: MyCC not producing any bins
... Hi Kevin
Thanks for your reply.
The python version is given below:
Python 2.7.13 :: Continuum Analytics, Inc.
Let me follow up on your suggestions and then I will get back to you.
regards
Suran ...
written 4 weeks ago by
suran.nambisan • 0
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Comment:
A: MyCC not producing any bins
... Hi Kevin.
Sorry for late reply and sorry for the mess above. Is there a way to attach the log file?
I did not see any errors. And the tool just ran and ended. I saw it did produce intermediate files but since -keep was not used they were removed and finally only this log remains. I followed the w ...
written 4 weeks ago by
suran.nambisan • 0
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Comment:
A: MyCC not producing any bins
... 20190217_1355
1_rename.py /home/group_ss1/Suran/Data_MyCC/Ahk_umapped_scaffold.fa 1000
Seqs >= 1000 : 84268
Minimum contig lengh for first stage clustering: 1269
run Prodigal.
/home/group_ss1/software/MyCC_related/Tools/prodigal.linux -i My.fa -a gene.aa -d gene.nuc -f gbk ...
written 4 weeks ago by
suran.nambisan • 0
• updated
4 weeks ago by
Kevin Blighe ♦ 39k
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... Hello All
I am unable to get any output files after running MyCC.
MyCC.py mg_scaffold.fa
Only the log file exists nothing else. Could you please help?
Thanks
Suran ...
written 5 weeks ago by
suran.nambisan • 0
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Comment:
A: MyCC not producing any bins
... Hi All
I have used MyCC.py but am not able to get any output except the log file.
MyCC.py mg_scaffolds.fa
Could you please help?
Thanks
Suran ...
written 5 weeks ago by
suran.nambisan • 0
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