User: arsilan324

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arsilan32460
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Posts by arsilan324

<prev • 56 results • page 1 of 6 • next >
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Comment: C: counting number of genes located on positive or negative strands
... Thank you to both of you! It worked.. Thanks!!! ...
written 11 weeks ago by arsilan32460
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counting number of genes located on positive or negative strands
... Hi all, Maybe this is a very basic question but I must tell that I am not a bioinformatics person. I just need to count total number of positive and negative genes located on chromosome in .genes or .gff3 file. Can you please comment how can I do that? Thanks in advance ...
gff3 htseq written 11 weeks ago by arsilan32460 • updated 11 weeks ago by mike-zx110
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(Closed) Merging cells in each rows using semicolon?
... Hi all, This may be a very basic question but I am not able to fo since last hour. I want to merge cells in each row using a comma or semicolon. The data looks like OTU_1 23 15 273 51 127 190 220 83 k__Bacteria p__Chloroflexi c__SJA-15 o__C10_SB1A f__C10_SB1A g__Candidatus Amarilinum s__ The ...
R statistics excel data written 5 months ago by arsilan32460
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Answer: A: How to fix Error in `$<-.data.frame`(`*tmp*`, "Kingdom", value = character(0)) :
... The new version ampvis2 worked perfectly. Thanks! ...
written 5 months ago by arsilan32460
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Comment: C: How to fix Error in `$<-.data.frame`(`*tmp*`, "Kingdom", value = character(0)) :
... Apologies. Here is the command. amp_rabund(data = dsn, tax.aggregate = "Genus", tax.add = "Phylum", scale.seq = 100) ...
written 5 months ago by arsilan32460
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How to fix Error in `$<-.data.frame`(`*tmp*`, "Kingdom", value = character(0)) : replacement has 0 rows, data has 2407
... Hi all, I am stuck with this error. Error in `$<-.data.frame`(`*tmp*`, "Kingdom", value = character(0)) : replacement has 0 rows, data has 2407 This is what I get after running this command amp_rabund(data = physeqP, tax.aggregate = "Genus", tax.ad ...
rank abundance phyloseq written 5 months ago by arsilan32460
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Is there any quick way to annotate KO terms using a script or tool?
... Hi all, I have a list of KO IDs, and their frequency which I want to annotate. Can you please help me suggesting how can I do so. I have started this manually but it is taking time. But I would appreciate any computational method doing this. KO-Term KO-freq Annotation K13457 49 RPM1, RPS3; ...
ko annotation kegg written 6 months ago by arsilan32460 • updated 6 months ago by Pierre Lindenbaum116k
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Comment: C: How to re-order (sort) to get top values for each column in excel sheet of OTUs?
... Awesome! It worked perfectly. Many thanks!!! ...
written 6 months ago by arsilan32460
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Comment: C: How to re-order (sort) to get top values for each column in excel sheet of OTUs?
... It worked! Thanks! But now another question. It has arranged all the values in ascending order but the genus name is still at the end (common for all). I doubt if it is right. Each column should have its own unique Genus arrangement (if not at all, but at some levels). Do you understand my point? ...
written 6 months ago by arsilan32460
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Comment: C: How to re-order (sort) to get top values for each column in excel sheet of OTUs?
... What i get is this > str(sdf1) 'data.frame': 2408 obs. of 74 variables: $ R3.Rhizo.1: int 0 0 0 0 0 0 0 0 0 0 ... $ R3.Rhizo.2: int 0 0 0 0 0 0 0 0 0 0 ... $ R3.Rhizo.3: int 0 0 0 0 0 0 0 0 0 0 ... $ R3.Rhizo.4: int 0 0 0 0 0 0 0 0 0 0 ... $ Genus : int ...
written 6 months ago by arsilan32460

Latest awards to arsilan324

Popular Question 5 months ago, created a question with more than 1,000 views. For NameError: name 'utils' is not defined
Scholar 5 months ago, created an answer that has been accepted. For A: How to fix Error in `$<-.data.frame`(`*tmp*`, "Kingdom", value = character(0)) :

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