User: brettgao2018

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brettgao2018150
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Posts by brettgao2018

<prev • 5 results • page 1 of 1 • next >
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Tool: iStack: an R solution for plotting stacked bars using custom icons
... At a recent conference, a colleague of mine presented a summary plot of her patient cohort in the form of stacked people icons, and it was wildly popular among the audience. Many asked how they can make such plot, but unfortunately it was made manually using powerpoint. Therefore we figured out a R ...
R tool written 5 weeks ago by brettgao2018150
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Comment: C: Visualization tool integrating point mutations, copy number alterations, and str
... This is a really neat solution! ...
written 8 weeks ago by brettgao2018150
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Comment: C: Visualization tool integrating point mutations, copy number alterations, and str
... Thanks, but I'm more looking for a visualization that shows all three kinds of alterations in one plot, so that it's possible to put everything in context and infer the consequence/evolutionary history of a point mutation (e.g. allelic dosage, timing of the point mutation with respect to the copy nu ...
written 8 weeks ago by brettgao2018150
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Answer: A: novel miRNA identification from sequence
... Check out the novel miRNA prediction module in sRNABench: http://bioinfo2.ugr.es:8080/ceUGR/srnabench/ ...
written 8 weeks ago by brettgao2018150
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Visualization tool integrating point mutations, copy number alterations, and structural variations
... When analyzing clinical genomes, I often find it hard to visualize the genomic context of a potential driver mutation (say a point mutation on a key cancer gene). For example, is there simultaneous LOH/amplification at the mutation locus? How many copies of the mutant allele are there? Did the mutat ...
genome gene next-gen written 8 weeks ago by brettgao2018150

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