User: edmund.a.miller

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Posts by edmund.a.miller

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Comment: A: Hisat2 with SLURM
... I don't have an answer to your exact question but I might recommend checking out this sankemake wrapper https://snakemake-wrappers.readthedocs.io/en/stable/wrappers/hisat2.html Then making use of this snakemake profile https://github.com/Snakemake-Profiles/slurm Which this might all "just work" ou ...
written 7 months ago by edmund.a.miller0
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Comment: C: Largest RNAseq dataset other than L1000?
... Sounds good. I haven't started this part of my project yet but it's something I'll need to think about soon so let's see if we can work this out. How many data sets do you need? I found: http://www.roadmapepigenomics.org/data/tables/all 460 here: https://www.encodeproject.org/matrix/?type=Experi ...
written 2.3 years ago by edmund.a.miller0
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Answer: A: Largest RNAseq dataset other than L1000?
... What exactly is looking to do with the RNA-Seq data? Working on a similar project, feel free to message me. ...
written 2.3 years ago by edmund.a.miller0

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