User: miniymay101

gravatar for miniymay101
Reputation:
0
Status:
New User
Last seen:
2 months, 4 weeks ago
Joined:
4 months, 1 week ago
Email:
m**********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by miniymay101

<prev • 10 results • page 1 of 1 • next >
0
votes
1
answer
230
views
1
answers
Comment: C: For cancer classification, can I use normal tissue sample of patients?
... Umm.. I cannot 100% understand "control with an healthy tissue of the same patient".. Does this mean that I can use normal tissue of the same patients as normal one and proceed cancer classification(TCGA tumor v.s normal) based on this? ...
written 3 months ago by miniymay1010
0
votes
1
answer
230
views
1
answers
Comment: C: For cancer classification, can I use normal tissue sample of patients?
... I can not sure 100% the tissue is normal part, but I will gonna use TCGA data set and It says there are data sets which are normal samples, so I thought I could maybe use them as normal one. Isn't TCGA data authorized one? ...
written 3 months ago by miniymay1010
1
vote
1
answer
230
views
1
answer
For cancer classification, can I use normal tissue sample of patients?
... Hi, I have a question of using sample Data. I want to try some experiments of using classification method for cancer classification using DNA methylation values. I will use methylation beta value of TCGA solid tumor for cancer data. A question I have is that I want to use normal sample data to co ...
cancer classification written 3 months ago by miniymay1010 • updated 3 months ago by jomo018310
0
votes
2
answers
233
views
2
answers
how to give limitation in heatmap3
... Hi, now I am drawing a heatmap using heatmap3 package in R. I have a question in drawing heatmap. My read count datas are ranged from about [-8,8], but I want to make the colors presented in [-1,1]. For example, if my read count data is bigger than 1 (e.g. 4), than it should be represented in th ...
heatmap3 written 4 months ago by miniymay1010 • updated 8 weeks ago by zhaoshilin0
0
votes
0
answers
257
views
0
answers
Comment: C: Help me to find out the reason of this error in RnBeads...
... In differential methylation analysis html page, I got regional level - scatter plots & volcano plots, but "Differential Methylation Tables" subsection is totally missing. It only has : A tabular overview of measures for differential methylation on the region level for the individual co ...
written 4 months ago by miniymay1010
0
votes
0
answers
257
views
0
answers
Comment: C: Help me to find out the reason of this error in RnBeads...
... ..@ covg.regions :List of 4 .. ..$ tiling : list() .. .. ..- attr(*, "physical")=Class 'ff_pointer' .. .. .. ..- attr(*, "vmode")= chr "integer" .. .. .. ..- attr(*, "maxlength")= int 10500120 .. .. .. ..- attr(*, "pattern")= chr "ff" .. .. .. ..- ...
written 4 months ago by miniymay1010
0
votes
0
answers
257
views
0
answers
Comment: C: Help me to find out the reason of this error in RnBeads...
... .. ..$ genes : list() .. .. ..- attr(*, "physical")=Class 'ff_pointer' .. .. .. ..- attr(*, "vmode")= chr "double" .. .. .. ..- attr(*, "maxlength")= int 1003932 .. .. .. ..- attr(*, "pattern")= chr "ff" .. .. .. ..- attr(*, "filename")= chr "/data1/project/ ...
written 4 months ago by miniymay1010
0
votes
0
answers
257
views
0
answers
Comment: C: Help me to find out the reason of this error in RnBeads...
... ..@ regions :List of 4 .. ..$ tiling : num [1:583340, 1:3] 1 1 1 1 1 1 1 1 1 1 ... .. .. ..- attr(*, "dimnames")=List of 2 .. .. .. ..$ : NULL .. .. .. ..$ : chr [1:3] "" "" "regInd" .. ..$ genes : num [1:55774, 1:3] 1 1 1 1 1 1 1 1 1 1 ... ...
written 4 months ago by miniymay1010
0
votes
0
answers
257
views
0
answers
Comment: C: Help me to find out the reason of this error in RnBeads...
... > str(rnb2.set) Formal class 'RnBiseqSet' [package "RnBeads"] with 12 slots ..@ status :List of 2 .. ..$ disk.dump : logi TRUE .. ..$ disk.dump.bigff: logi FALSE ..@ pheno :'data.frame': 18 obs. of 3 variables: .. ..$ sampleID ...
written 4 months ago by miniymay1010
0
votes
0
answers
257
views
0
answers
Help me to find out the reason of this error in RnBeads...
... Hello, I am a beginner who start to study bioinformatics. Now I am trying to run RnBeads (R package) to analyze bisulfite sequencing data. I have beed used this package for several times and had successful results without any error. But this time I tried for 3 times, but still getting an same err ...
software error rnbeads written 4 months ago by miniymay1010 • updated 4 months ago by Friederike1.6k

Latest awards to miniymay101

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 601 users visited in the last hour