User: jukka.matilainen

Reputation:
0
Status:
New User
Last seen:
1 month, 1 week ago
Joined:
3 years ago
Email:
j***************@euformatics.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by jukka.matilainen

<prev • 3 results • page 1 of 1 • next >
0
votes
2
answers
226
views
2
answers
Comment: C: How can I get the uncompressed size of a BGZIP file ?
... Unfortunately I am not that familiar with the tabix tbi file format. The format is documented [here][1], and by a quick glance I would assume that in a tbi index for a bgzipped file, all the offsets would be referring to the compressed file, and not the uncompressed content, so the answer would prob ...
written 8 weeks ago by jukka.matilainen0
0
votes
2
answers
226
views
2
answers
Comment: C: How can I get the uncompressed size of a BGZIP file ?
... No, a gzi index file is in a different format than a tbi tabix index file. The gzi file is produced when running `bgzip` with the `-i` switch when compressing or with the `-r` switch when running on an existing bgzipped file. ...
written 8 weeks ago by jukka.matilainen0
0
votes
2
answers
226
views
2
answers
Answer: A: How can I get the uncompressed size of a BGZIP file ?
... If you happen to have the *.gzi index file around (bgzip `-i` option when compressing), you could read the uncompressed offset of the last block from the index file. This way you'll only need to decompress the last block to find its uncompressed size. In Bash you could do it for example like this. ...
written 8 weeks ago by jukka.matilainen0

Latest awards to jukka.matilainen

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1437 users visited in the last hour
_