User: jukka.matilainen
jukka.matilainen • 0
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Posts by jukka.matilainen
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... Unfortunately I am not that familiar with the tabix tbi file format. The format is documented [here][1], and by a quick glance I would assume that in a tbi index for a bgzipped file, all the offsets would be referring to the compressed file, and not the uncompressed content, so the answer would prob ...
written 8 weeks ago by
jukka.matilainen • 0
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... No, a gzi index file is in a different format than a tbi tabix index file. The gzi file is produced when running `bgzip` with the `-i` switch when compressing or with the `-r` switch when running on an existing bgzipped file. ...
written 8 weeks ago by
jukka.matilainen • 0
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... If you happen to have the *.gzi index file around (bgzip `-i` option when compressing), you could read the uncompressed offset of the last block from the index file. This way you'll only need to decompress the last block to find its uncompressed size.
In Bash you could do it for example like this.
...
written 8 weeks ago by
jukka.matilainen • 0
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