User: cwright

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cwright0
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Posts by cwright

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Comment: C: GATB buildNode giving errors
... Yes I am using the GraphUnitigs, thank you for the help. I will re-implement and open another question/email if I have more problems. Thank you! ...
written 6 weeks ago by cwright0
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Comment: C: GATB buildNode giving errors
... I can get what I want if I do some really inefficient things, but I really want to avoid this: int kSize = graph.getKmerSize(); std::string contig = seq.toString(); ///get the kmer from end of contig std::string lstr = contig.substr(0,kSize); std::string rst ...
written 11 weeks ago by cwright0
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Comment: C: GATB buildNode giving errors
... That will get rid of the errors yes...But then it isn't the right type for subsequent calls. Essentially I want to take an existing contig and extend it using the graph, something like this: int kSize = graph.getKmerSize(); std::string contig = seq.toString(); string seqRigh ...
written 11 weeks ago by cwright0
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GATB buildNode giving errors
... I am playing around with the GATB library, and I have run into some problems, hopefully simple to overcome with guidance. I was reading through some other questions, specifically the question at: https://www.biostars.org/p/149607/#149648 In the comments it says you can use Graph::buildNode to retur ...
gatb written 12 weeks ago by cwright0 • updated 12 weeks ago by Rayan Chikhi1.4k

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