User: Lidia

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Lidia 0
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Posts by Lidia

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Answer: A: GATK4 Variant calling with non-human model and no known SNP database
... Thank you very much for your answer. I wil continue then with the Haplotyper caller in GVCF mode. Thanks! ...
written 11 months ago by Lidia 0
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GATK4 Variant calling with non-human model and no known SNP database
... Hi everyone. I recently started working with DNA whole genome sequencing for variant calling with GATK 4.0. I am working on a fish where I don´t have a database of know SNPs nor of indels. I have a total of 394 individuals. This means that I have 394 WGS samples and I would like to use the GVCF wor ...
genome snp written 11 months ago by Lidia 0
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2-pass mapping with STAR
... Hello everyone! I am new in the use of this tool and therefore I have some questions. I am working with RNA paired end read sequences. My goal is to find SNPs in 2 strains of trout to be able to compare them, from each strain I have 8 fish sampled, each fish with 6 different tissues. I already went ...
spliced junctions star rna-seq written 2.5 years ago by Lidia 0 • updated 2.5 years ago by Santosh Anand5.1k

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Popular Question 2.3 years ago, created a question with more than 1,000 views. For 2-pass mapping with STAR

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