User: danielke

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danielke10
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Posts by danielke

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Comment: C: MITE hunter stops after step 2
... OK so I've tried it and still the same problem. What could be the problem with installation? This is what I do to run MITE_hunter after installation. Might it be the first error ? perl MITE_Hunter_manager.pl -i /home/my_user/MITE_hunter/tau/tau_d1.fasta -g tau_d1 -c 95 -f 200 -L 50 -n 20 -S 1 ...
written 17 months ago by danielke10
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Comment: C: MITE hunter stops after step 2
... What do you mean index the genome? it is done by the RepeatMasker, if I'm not wrong.. What do you mean change the privilege to mdust? what should i do? Thanks for your help :) ...
written 17 months ago by danielke10
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MITE hunter stops after step 2
... Hey everyone, I started working with MITE hunter and for some reason it stops running after step 2, error showing is: sh: 1: /home/my-user/MITE_hunter/mdust/: Permission denied Use of uninitialized value $Seq in split at /home/my-user/MITE_hunter/MITE_hunter_2011/low_complexity_filter.pl ...
mites transposons mite-hunter written 17 months ago by danielke10 • updated 7 weeks ago by eslemikkelsen0
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Comment: C: RepeatMasker error - BEGIN failed--compilation aborted at /usr/local/RepeatMaske
... It didn't work when I moved it to one of the mentioned libraries, but I used this command : cpan Text::Soundex and looks like it's working. Thank you! :) ...
written 17 months ago by danielke10
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Comment: C: RepeatMasker error - BEGIN failed--compilation aborted at /usr/local/RepeatMaske
... I moved it to /usr/lib/ ...
written 17 months ago by danielke10
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RepeatMasker error - BEGIN failed--compilation aborted at /usr/local/RepeatMasker/Taxonomy.pm line 83.
... Hey all, I'm new to unix and would appreciate your help with understanding these errors. I'm trying to work with Repeatmasker, I've installed all needed softwares according to its manual, but I guess some modules are still missing. This is what I get: /usr/local/RepeatMasker# ./RepeatMasker Ca ...
installation transposons unix repeatmasker soundex written 17 months ago by danielke10

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