User: bisht20diksha

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Posts by bisht20diksha

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Comment: C: featureCounts, GZIP ERROR:-2
... okay I will check from the first step again. ...
written 12 weeks ago by bisht20diksha20
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Comment: C: featureCounts, GZIP ERROR:-2
... no, I am trying with the same files, I did not check or hisat2 earlier. I just checked for `BAM` and it was there in new bam directory. I didn't have much experience with iMac. So, now, In my Linux system, I have installed HISAT2 using conda and then I ran `hisat2` to check whether its working or n ...
written 12 weeks ago by bisht20diksha20
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Comment: C: featureCounts, GZIP ERROR:-2
... Hello Ma'am @Shalu I checked my all commands again and tried it on my Linux system also. I found that when I am trying to align using HISAT2, I am getting the following error: > (ERR): hisat2-align exited with value 1 because of which, I am getting empty `BAM` files (0 bytes). Please help with ...
written 12 weeks ago by bisht20diksha20
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Comment: C: featureCounts, GZIP ERROR:-2
... when i tried `file bam/HBR_1.bam` , I am getting this error: > bam/HBR_1.bam: gzip compressed data, extra field is it because these files are zipped one? what I have to do next? ...
written 12 weeks ago by bisht20diksha20
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Comment: C: featureCounts, GZIP ERROR:-2
... No, I did not find any error while creating bam files. I have generated a directory named griffith and then I have downloaded the data from: This is the URL for the data >URL=http://data.biostarhandbook.com/rnaseq/projects/griffith/griffith-data.tar.gz Download and unpack the data >curl ...
written 3 months ago by bisht20diksha20
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Comment: C: featureCounts, GZIP ERROR:-2
... No, I did not check the validity as I was following the instructions provided in the tutorial. Corrupted `BAM` could be the problem. I will try these points suggested by you and will update then. thanks for the suggestions. ...
written 3 months ago by bisht20diksha20
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Comment: C: featureCounts, GZIP ERROR:-2
... I am also encountering this error for the first time. yes, the command is used is: /Users/gkp8/src/subread-1.5.1-source/bin/featureCounts -p -t exon -g gene_id -a refs/ERCC9.2.gtf -o counts.txt bam/HBR_1.bam bam/HBR_2.bam bam/HBR_3.bam ...
written 3 months ago by bisht20diksha20 • updated 3 months ago by genomax91k
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featureCounts, GZIP ERROR:-2
... Hello. I am new to differential gene expression analysis. I was trying the tutorial of griffith test data provided in BIOSTAR HANDBOOK. I have done the alignment using HISAT2 and when I am doing quantification using the > featureCounts I am getting the GZIP ERROR:-2 as follows: > GZIP ERRO ...
ngs degs subread rna-seq written 3 months ago by bisht20diksha20 • updated 3 months ago by Shalu Jhanwar470
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how to retrieve sequences from genome
... Hello I have a sequenced genome for my sample. Also for some genes i have chromosome start and end. Now i want to retrieve these sequences from genome? How can i retrieve these sequences from the sequenced genome? ...
genome sequences written 2.5 years ago by bisht20diksha20 • updated 2.5 years ago by WouterDeCoster44k
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Comment: C: error in intron clustering
... thanks for the guidance. link for the leafcutter: http://davidaknowles.github.io/leafcutter/ ...
written 2.6 years ago by bisht20diksha20

Latest awards to bisht20diksha

Popular Question 9 weeks ago, created a question with more than 1,000 views. For error in differential analysis using splAdder
Popular Question 10 months ago, created a question with more than 1,000 views. For error in differential analysis using splAdder
Popular Question 2.4 years ago, created a question with more than 1,000 views. For input for rMATS
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Error while generating index files using samtools

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