User: shaban.hiba8

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shaban.hiba810
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Posts by shaban.hiba8

<prev • 9 results • page 1 of 1 • next >
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Database of IHC scores for Cell Lines
... Hello all, This might be a newbie question because I don't know if there's any such thing out there but if there is a database or website that has information on IHC scores in cell lines (preferably scores and stains) can you please point me to it? I'm looking specifically for HER2(ERBB2) staining ...
cell line ihc written 8 weeks ago by shaban.hiba810
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Comment: C: get GTEx mean expression by tissue
... Thanks! If you write it as an answer I will accept it ...
written 12 weeks ago by shaban.hiba810
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Comment: C: get GTEx mean expression by tissue
... I would but I also need to calculate standard deviation, so it's gotta be from the original GTEx counts ...
written 4 months ago by shaban.hiba810
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get GTEx mean expression by tissue
... I've downloaded the GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_tpm.gct file from GTEx (https://gtexportal.org/home/datasets) and would like to calculate the mean expression per tissue type, but I can't seem to find documentation on which GTEx ID's belong to each tissue type. For example the fil ...
rnaseq gtex rnaseq gtex rna-seq written 4 months ago by shaban.hiba810 • updated 12 weeks ago by os461430
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Comparing RNAseq expressions in cancer cell lines to patient population in order to pick cell lines to work with
... I would like to be able to pick cancer cell lines that have "high", "medium" and "low" expressions of certain genes based on what the high, medium, and low expressions of those genes are in cancer patient populations. Would need to know the distribution of expressions in patients before determining ...
cancer cell lines tcga written 6 months ago by shaban.hiba810 • updated 6 months ago by ATpoint23k
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Answer: A: How to install preprocessCore package in Rstudio?
... Try installing it with bioconductor biocLite source("https://bioconductor.org/biocLite.R") biocLite("preprocessCore") ...
written 19 months ago by shaban.hiba810
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Comment: C: homebrew/science gone, what's an alternative to brew install (___)
... I tried brew tap brewsci/bio brew install FORMULA but it's saying: Error: No available formula with the name "formula" ==> Searching for a previously deleted formula (in the last month)... Warning: homebrew/core is shallow clone. To get complete history run: git -C "$(brew --repo homebrew/co ...
written 20 months ago by shaban.hiba810
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Comment: C: homebrew/science gone, what's an alternative to brew install (___)
... Thanks for the help! I had tried installing it using miniconda before but not bioconda and it worked! ...
written 20 months ago by shaban.hiba810
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homebrew/science gone, what's an alternative to brew install (___)
... I'm new to bioinformatics and to this site so pardon me if this isn't the place for this question (or if it doesn't make sense!) but I've tried to install EMBOSS in the terminal and it seems that using "brew install emboss" doesn't work anymore? Not sure exactly why but could have to do with the dep ...
terminal written 20 months ago by shaban.hiba810 • updated 20 months ago by kloetzl1.0k

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