User: mgoldste

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mgoldste0
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Posts by mgoldste

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Comment: C: Single vs paired ends in quantification
... I took the paired end reads (separate files denoted R1 and R2) for each sample time (two time periods, 3 duplicates). I ran RSEM from a script file with the paired option (so the script file contained R1 and R2) and through a separate script ran R1 and R2 individually. I then ran ebseq either usin ...
written 4 months ago by mgoldste0
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Single vs paired ends in quantification
... I ran RSEM-Ebseq on some data, with paired and unpaired options and got different numbers for differentially expressed genes. Why might this be? ...
rna-seq written 4 months ago by mgoldste0 • updated 5 days ago by Corentin230
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Cuffmerge GFF Error: duplicate/invalid 'transcript'
... Hi everyone, I am trying to run cuffmerge with the catfish genome from https://www.ncbi.nlm.nih.gov/genome/198, with the gff file ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/660/625/GCF_001660625.1_IpCoco_1.2/GCF_001660625.1_IpCoco_1.2_genomic.gff.gz but I keep getting the same error. I have trie ...
genome rna-seq written 12 months ago by mgoldste0 • updated 12 months ago by Kevin Blighe37k

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