User: Zee_S

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Zee_S60
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Posts by Zee_S

<prev • 59 results • page 1 of 6 • next >
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Comment: C: Where to find historical photos of John Carbon and Louise Clarke doing their exp
... Thank you very much h.mon ...
written 3 months ago by Zee_S60
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Comment: C: Where to find historical photos of John Carbon and Louise Clarke doing their exp
... Thank you So much! i have posted there. many thanks for leaving my post. ...
written 3 months ago by Zee_S60
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Forum: (Closed) Where to find historical photos of John Carbon and Louise Clarke doing their experiments?
... dear all, Can anyone point me to a link or publication where i can find some photos of John Carbon and Louise Clarke in their lab? this is for a research project and i have searched the internet with no luck and as a final resort i am coming to you. perhaps there is a photo gallery or biography or ...
forum budding yeast centromere written 3 months ago by Zee_S60 • updated 3 months ago by h.mon31k
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Comment: C: how to visualize rna-seq coverage track in igv?
... Hello! I would like to come back to this post to ask: when we visualise RNA-seq tracks, do you include both unique and multi mappers? or why is it that some people only use unique mappers? which is the correct way? Thank you! ...
written 7 months ago by Zee_S60
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Comment: C: how to visualize rna-seq coverage track in igv?
... this is very useful feedback thank you very much. ...
written 11 months ago by Zee_S60
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Comment: C: how to visualize rna-seq coverage track in igv?
... what do you mean by larger zoom out? can you please elaborate? ...
written 11 months ago by Zee_S60
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how to visualize rna-seq coverage track in igv?
... Hello biostars community, how does one visualize an rna-seq coverage track alongside chip-seq bigwig tracks in igv? the problem i have is that, when i zoom into the rna-seq coverage track (becaus eit is a bam file), i lose the resolution on my bigwig tracks (too zommed in) and i can no longer vis ...
normalization bam coverage rna-seq igv written 11 months ago by Zee_S60 • updated 11 months ago by jared.andrews077.5k
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STAR mapping statistics don't add up with samtools count
... Hello Biostars community, I have PE samples mapped with STAR and i want to count the number of uniquely mapped reads using samtools. i did the following (using the Alex Dobin's advice in this link: https://groups.google.com/forum/#!topic/rna-star/pQbqeQd0lNY) : SE: $ samtools view -c -q 255 -F ...
read count pe samtools star se written 11 months ago by Zee_S60 • updated 11 months ago by lieven.sterck8.7k
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what does the alignment statistics of your RNA spike-in tell you about your sample of interest in two experimental conditions?
... Dear Biostars community, I was hoping to get your ideas on how to interpret RNA-seq data in two samples before and after drug treatment, based on the mapping statistics of exogenous spike-in RNA. One sample is untreated. the other sample is treated with a drug to (theoretically) increase transcrip ...
spike-in rna-seq normalization star written 12 months ago by Zee_S60
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Comment: C: Is there a way to get multiBigwigSummary with 1-based coordinates instead of 0-b
... understood. thank you so much for your help! ...
written 13 months ago by Zee_S60

Latest awards to Zee_S

Popular Question 7 months ago, created a question with more than 1,000 views. For How to add a regression line and change colors in ggplot smoothscatter?
Popular Question 7 months ago, created a question with more than 1,000 views. For How to correlate chip seq peaks?
Popular Question 7 months ago, created a question with more than 1,000 views. For how to split/ expand a bedGraph file into genomic coordinates of equal bin size ?
Popular Question 11 months ago, created a question with more than 1,000 views. For How to add a regression line and change colors in ggplot smoothscatter?
Popular Question 11 months ago, created a question with more than 1,000 views. For How to do correlation analyses between RNAseq and ChIPseq library?
Popular Question 11 months ago, created a question with more than 1,000 views. For How to annotate repeats?
Popular Question 13 months ago, created a question with more than 1,000 views. For how to split/ expand a bedGraph file into genomic coordinates of equal bin size ?
Popular Question 22 months ago, created a question with more than 1,000 views. For how to split/ expand a bedGraph file into genomic coordinates of equal bin size ?

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