User: Zee_S

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Zee_S20
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2 months, 3 weeks ago
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1 year, 1 month ago
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a**************@curie.fr

Posts by Zee_S

<prev • 41 results • page 1 of 5 • next >
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How to divide a chromosome into arms and center?
... Hi all, I would like to get your input on how to make separate bed files of chromosome arms and center using the original chromosome start end positions. Thank you! ...
chromsome arm coordinates center bed written 3 months ago by Zee_S20
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Comment: C: How to add linear regression line and change the colors of my hexbin scatterplot
... ok many thanks, Devon for the clarification. I apologize for the mistake on my part. ...
written 4 months ago by Zee_S20
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Comment: C: How to add linear regression line and change the colors of my hexbin scatterplot
... hello, I'm sorry for my mistake. However, I posted this here after noticing that many people post questions related to plotting in R on this forum. I am certainly not the first one to do it. and you might notice that people do post numerous solutions to Rstudio-related questions which have absolute ...
written 4 months ago by Zee_S20
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How to add linear regression line and change the colors of my hexbin scatterplot?
... Hello everyone, I am a beginner in learning how to make beautiful plots in R. I would like to know how to improve this basic code I wrote to make a scatterplot with hexbin package? want to do the following things to the basic plot that I have now: (a) add a linear regression line. (b) change the ...
hexbin linear regression scatterplot R written 4 months ago by Zee_S20 • updated 4 months ago by zx87546.7k
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Comment: A: How to add a regression line and change colors in ggplot smoothscatter?
... hello! thank you so much for your comments. Im sorry for not being more elaborate. `geom_smooth()` doesn't work for me with smoothScatter function. perhaps I'm not adding it at the right layer? I would also like to change the bandwidth for smoothing, to get less blurred data points at the periph ...
written 4 months ago by Zee_S20 • updated 4 months ago by RamRS20k
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Deeptools plotCorrelation function bug?
... Hello, im not sure this is the right place to post this, but I've recently been plotting some scatterplots using deep tools plotCorrelation function. during analysis of the distribution of points on the plot, I feel like the output file labels the axes in reverse (ie. x as y and y as x). to see if t ...
deeptools plotcorrelation written 5 months ago by Zee_S20
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How to add a regression line and change colors in ggplot smoothscatter?
... I would like to know a script template to do the above. can someone please help me? ...
R ggplot smoothscatter written 5 months ago by Zee_S20
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How to correlate chip seq peaks?
... Hello everyone, I am seeking some tips on how to calculate the pearson/spearman correlation between two chip seq peak profiles. I have the coordinates of the peaks in a bed format. I think I have to bin the peaks and correlate the read count in aligned bins but I'm wandering, how to make sure the ...
pearson peaks correlation chip seq spearman written 8 months ago by Zee_S20 • updated 8 months ago by Rory Stark490
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how to correlate RNAseq dataset to chipset dataset?
... Hello, Can anyone please suggest me a method to look at the correlation between a chIP-seq dataset and RNA-seq dataset? Thank You very much! ...
rnaseq chipseq correlation written 10 months ago by Zee_S20
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how to produce a cluster plot of rna-seq + chipseq data?
... Hello everyone, I would like to create a correlation plot of some RNAseq data and ChIPseq data, would you happen to have any ideas on a good pipeline to do this, and what kind of normalization need to be done beforehand? I just want do a cluster analyses of the two datasets instead of using gene ...
rnaseq chipseq correlation written 10 months ago by Zee_S20

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