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Posts by asjannu
Is there a way to plot both tumor and normal samples' copy number segments on the same plot using CNVkit scatter
... Hi, I have been using CNVkit for 3 months now and discovering few interesting things. These are my questions: 1) How can plot copy number segments of paired tumor and normal samples on the same scatter plot? Something like this ![enter image description here] 2) I have done Segmentation and S ...
... Hi, I have used CNVkit.py on targeted sequencing, did the segmentation and called the segments. Using -diagram option,I plotted ideograms for my files. My only concern is I couldn't get how I can set a threshold such that only significant genes appear on the ideogram. I know that 'diagram' option co ...
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