User: Joe

gravatar for Joe
Joe10
Reputation:
10
Status:
New User
Location:
Vancouver
Last seen:
1 day, 1 hour ago
Joined:
9 months, 3 weeks ago
Email:
d********@gmail.com

Posts by Joe

<prev • 15 results • page 1 of 2 • next >
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Comment: C: Using BLAST Alignment with low sensitivity
... You should add the -task blastn parameter (for finding sequences with low identity) even though your DNA sequence are longer than 50 bases. Because the default parameter is megablast, which is used to find very similar sequences. ...
written 8 months ago by Joe10
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Answer: A: how can I perform gene onthology
... DAVID: https://david.ncifcrf.gov/tools.jsp ...
written 8 months ago by Joe10
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Comment: C: How to get descriptions for rs* SNP identifiers?
... SNP annotations file: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/snp142Common.txt.gz ...
written 8 months ago by Joe10
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Comment: C: How to predict individual ethnicity information by using hapmap data
... Thanks Kevin! This is exactly what I want! ...
written 8 months ago by Joe10
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How to predict individual ethnicity information by using hapmap data
... Hi all, I want to predict the ethnicity information of individuals by using ML method. HapMap genotype data were treated as training set, and unknown individuals' genotype data as testing set. Because this is my first time to do the ethnicity prediction, anyone can give some detail informations (su ...
hapmap ethnicity snp written 8 months ago by Joe10 • updated 8 months ago by Kevin Blighe32k
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Comment: A: How to get the coordinations of CpG sites in non-human genome
... Hi aays, Thanks for your comments. Can you please share your Python script? ...
written 9 months ago by Joe10
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Comment: A: Reference & alternative alleles extracted from 1000G, Phase 3
... It's weird. Why did ID show two SNPs? I think your script extracting the 5 columns from vcf files made those mistakes. You can other scripts. ...
written 9 months ago by Joe10
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How to get the coordinations of CpG sites in non-human genome
... Hi there, I want to predict the CpG sites' exact position (not for CpG islands) in non-human genome. Anyone can help? Thanks! Joe ...
genome methylation non-human genome written 9 months ago by Joe10 • updated 9 months ago by ATpoint9.4k
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Comment: C: Using expression array data to predict ethnicty
... Awesome! I will try those algorithms. Thanks for your reply and have a good day. ...
written 9 months ago by Joe10
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Comment: C: Using expression array data to predict ethnicty
... Sorry for that. I didn't find the microarray tag. ...
written 9 months ago by Joe10

Latest awards to Joe

Popular Question 11 weeks ago, created a question with more than 1,000 views. For samtools sort error: [bam_sort_core] merging from 3 files and 1 in-memory blocks...
Supporter 5 months ago, voted at least 25 times.

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